Hahella chejuensis: HCH_00223
Help
Entry
HCH_00223 CDS
T00307
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V, beta subunit
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
hch
Hahella chejuensis
Pathway
hch03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hch00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
HCH_00223 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hch03400
]
HCH_00223 (recB)
Enzymes [BR:
hch01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
HCH_00223 (recB)
DNA repair and recombination proteins [BR:
hch03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HCH_00223 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
AAA_22
PDDEXK_1
DUF349
AAA_25
ResIII
AAA_11
DEAD
Motif
Other DBs
NCBI-ProteinID:
ABC27138
UniProt:
Q2SQD6
LinkDB
All DBs
Position
complement(231157..234702)
Genome browser
AA seq
1181 aa
AA seq
DB search
MRPLDPIAIPLQGVQLIEASAGTGKTYTITTLYLRLLLERQLDVRQILVVTFTRAATEEL
RTRIRQRIREVMQTLQAPPETDIAEWLQPWRDPERNGDALALLQQALLNMDEASIFTIHG
FCQRALQDNAFESGLLFDLRLQEDLGPLLQQAAEDTWRKLFYPDRLLAELAQAKWGEPAD
MLNGLRSYLAQGDLELIRPDVDPQALSHLAGALKAQWRQQGDDLTAAVREAAENKILGRA
EKTYREDKLNDAILSLTIWSRTEEQMTLPPAAALFSQSVLDASVLKKAADKGLGAPQHAF
FTALDQFLTQQTQLDAWLVGATLTAFKDVLQRLKTQAEILGFDDLIGSLKDALAAATGPQ
LRQALQRRYPVALIDEFQDTDPSQYRIFSSLYDAADGNATLFMIGDPKQAIYSFRGADIY
AYLQAKQRTPQDNRYTMDTNWRSRKELVAAVNGLFEQCANPFLFAGDIEFIPVQAAGAAD
ASVLTLDDVPVTPLQAWLLGREDGGKTISKDQARPQLAQITASEIANWLNLGECGRARLG
ERPLSAGDIAVLVRDNKQARIMSEKLSAVGVSSVFLTRESVYQSEEATDLLRLLRALLEP
NDERRLRAALVTLSWGWTAAELETLARDEQRWENMLTSLHQLREEWQDAGFMPMFQKWLQ
NFSVAARLLGLPEGERRLTNLLQLAELLQQAGRDYPTPERLLAWYQGQLEQADGRGDEHQ
LRLESDEALVKIVTIHSSKGLEYPLVFLPFLGFGRSGKDDYLMCHDPEREHRLVLDLSGG
DRLREQAERERLAEDLRLLYVALTRAKQLCVWAWGAVNEFQYAAMAWLLYGGATGSLTDW
LTSLKNLDDTQLAEPLTRLAAQTDFYWSPAPEPVHQRHQPGEGAGQWRARSAQRTVEQNW
RLSSYSQLAAGGGGRHSEEPLDEAEATLEVQPRLQPDVSDIFQFPKGAWAGQCFHHILEN
MPFQAESAEILHELTSHSLQQHGFGEEWVACVAEQLWQVVNTPLRQNGVTPFSLSQLDKA
NMQVEMEFLFPVTLIQQARLARFLADYSGSEAPVNLNVAANEGLMHGFIDLTFQHEGRFY
IADYKGSWLGEKRESYAPDNLRNEILAHRYDLQYLIYTLALHRYLQRSLPAYDYETHFGG
VYYLFLRGMHSQQQPELGVFFDRPSREAVAAFAEILQGEPA
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atgaggccgctggacccgatcgccattcctctacaaggcgtacagctcatcgaagccagc
gccggaacggggaagacctataccatcaccaccttgtatctgcgtctgttgctggaacgt
cagctcgacgtcagacagattctggtggtcacctttactcgcgccgccacagaagaactg
cgcacgcggattcgccagcgcatccgcgaggtcatgcagacgctgcaagctccgccggaa
acagatattgcggagtggctgcaaccctggcgcgacccggaacgcaatggcgatgcgctc
gctctgttgcagcaggcgctgttgaacatggacgaggcgtctatattcactattcacggt
ttctgccagcgcgccctgcaggacaacgcattcgaaagcgggctcttgtttgacctgcgc
ctgcaggaagacctgggcccattgctgcagcaggcggcggaggacacctggcgtaagctg
ttctatcccgaccgattgctggcggagctggcgcaagccaagtggggcgagccggcggat
atgctgaacggactgcgcagctatctggcgcaaggcgatctggagttgatccgcccggat
gtagacccgcaagccctcagccatctggctggcgcgctgaaagcccaatggcgtcaacaa
ggcgatgaccttaccgccgccgtacgggaagcggcggagaacaaaatactgggccgcgcg
gagaaaacttaccgggaagacaaactgaacgatgcgattctcagccttactatctggagc
cgcacggaagaacagatgacgctgcctcccgccgcagccctgttcagtcagagcgttctc
gatgcgtctgtgttgaaaaaagcggcggataaaggacttggcgcgccacagcatgctttc
ttcaccgctcttgaccagtttctgacccaacagacgcagttagacgcctggctggtaggc
gccacgctgaccgccttcaaggacgtactgcagcgtctgaaaacccaggcggaaatcctg
ggcttcgatgatctgatcggcagtctcaaagacgccctcgcagccgccaccggcccccag
ttacgccaggcgctgcaacgccgctacccagtcgccctgattgacgagtttcaagatacc
gacccatctcagtatcgcatcttctcctccctgtatgacgccgccgacggtaacgccact
ttgtttatgatcggcgaccccaagcaggcgatttacagcttccggggcgcggatatttac
gcctatctgcaagccaagcagcgcacgccccaggataatcgctacaccatggacactaac
tggcgctcccgtaaagaactggtggcggcggttaatggattgttcgaacagtgcgccaat
cctttcctgttcgccggcgatatagaattcattcccgtgcaggccgccggcgccgctgac
gcctccgttctgacattggacgacgtccccgtgacgccattgcaggcctggctgctcggc
cgtgaagacggcggaaagaccatcagtaaagatcaggcgcgaccgcagttggcgcaaatc
accgccagtgaaatcgccaactggctcaacctgggagaatgcggccgcgcccgtctgggc
gaacgcccgctcagcgccggcgacatcgccgtactggtgcgggataataaacaggcccgc
atcatgtcggaaaagctctccgccgttggcgtcagcagtgtgtttctgactcgggaaagc
gtctatcagagcgaagaggctaccgacctgctgcgtctgctgcgcgcgttactggagcct
aatgacgaacgtcgcctgcgcgctgcgctggtgaccctgagctggggatggaccgccgca
gagctggagacgctggcgcgggatgaacagcgctgggaaaacatgctgacctcgttgcac
cagttgcgggaggaatggcaggacgccggtttcatgcccatgtttcagaaatggctgcag
aactttagcgtcgccgccagactactgggtctcccggaaggcgagcgccgcctcaccaat
ctgttgcagctggctgaactattgcaacaggcgggacgcgactaccccacgcctgaacgc
ctgctggcctggtatcaaggacaactggagcaggcggacggacgcggcgacgagcatcag
ttacgtctggaaagtgacgaggcgctggtgaaaatcgtcaccatccacagttccaaaggg
cttgaatatccgttggtgtttctgccttttctggggtttggccgtagcggcaaagacgat
tatttaatgtgtcatgacccagaaagggaacatcgtctggtgctcgatctgagcggcggc
gaccgcttacgagaacaggcggagcgcgagcgtttggcggaagacctgcgtctgctttat
gtggcgctgacccgggccaaacaattgtgcgtctgggcctggggcgctgtgaatgagttc
cagtacgccgccatggcctggctgctgtatggcggcgccacgggcagtctgactgactgg
ctgacgtctctcaaaaatctggacgatacccaactggcggagcctctgacccgccttgcg
gcgcaaactgacttttactggagtccggcgcctgagccggtgcatcagcgccatcaaccc
ggcgaaggcgccggtcagtggcgcgcgcgctccgcccagcgcaccgtggagcaaaactgg
cgtttgtccagttattcgcaactggccgccggtggcggcggacgccatagcgaagagcct
ttggacgaggcggaagcgactctggaggtccagccccgtctgcaaccggacgtgagcgat
attttccagttccccaaaggcgcctgggccggacagtgttttcaccatattctggaaaat
atgccgtttcaggcggaaagcgccgaaatattgcatgaactcaccagtcacagcctgcaa
caacatggcttcggcgaagaatgggtggcctgcgtggcggagcagttatggcaagtggtg
aatacgccgctgcggcaaaacggcgtcacgcccttttcactgtcgcaactcgacaaggcc
aatatgcaggtggaaatggagtttttgtttcccgtgacgctgatacagcaggcgcggctc
gcccgcttcctggcggactactccggctcggaagcgccggttaatttaaacgtcgccgcc
aacgaaggcctgatgcacggctttatcgacctcacttttcagcatgaaggacgtttctat
atcgccgactacaagggcagctggcttggagaaaagcgggagagttacgcccccgacaac
ctgcgcaacgaaattctcgcgcaccgctacgatctgcaatatctgatttatacgctggcg
ctgcaccgttatttgcagcgcagcctgcccgcatatgactacgagacccattttggcggc
gtttactatctgtttttgcgtggcatgcacagccaacagcaaccggagctaggggtgttt
ttcgaccgtccctcgcgtgaagccgtggccgcttttgcagagattctgcagggagaaccg
gcatga
DBGET
integrated database retrieval system
