Hahella chejuensis: HCH_00898
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Entry
HCH_00898 CDS
T00307
Symbol
sbcC
Name
(GenBank) ATPase involved in DNA repair
KO
K03546
DNA repair protein SbcC/Rad50
Organism
hch
Hahella chejuensis
Brite
KEGG Orthology (KO) [BR:
hch00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hch03400
]
HCH_00898 (sbcC)
DNA repair and recombination proteins [BR:
hch03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HCH_00898 (sbcC)
Archaeal homologous recombinant proteins
HCH_00898 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SbcC_Walker_B
SMC_N
AAA_23
AAA_29
ABC_tran
nSTAND3
cobW
PI3K_P85_iSH2
AAA_21
Vps54_N
TsaE
DUF826
NTPase_1
AAA_22
AAA
AAA_15
AAA_25
Motif
Other DBs
NCBI-ProteinID:
ABC27789
UniProt:
Q2SNI5
LinkDB
All DBs
Position
897087..900776
Genome browser
AA seq
1229 aa
AA seq
DB search
MRILSLRLKNLNSLKGEWKVDFRADPFHSNGLFAITGPTGAGKTTLLDAICLALYHQTPR
INVSPTNNEIMTRHTAECLAEVEFEVKGEAYRAFWSQRRARNLAEGRFQPPHVELATADG
KILADKVKDKLTLIAELTGLDFARFTKSMLLAQGGFAAFLNAPANERAELLEELTGTEIY
GKISARVFERQRDAKGELERLRAKAEGQDLLSDDELTAYYEESTALETQEKTEAERLESL
RTQKQWLDRVTQAQQSFKEAELRLTEATARLEQEKTDLGRLALSEPAEKLRPFYKDYQQA
HDAYAQTERHIKSLTESLELARVELERKSSELALAKKALMQLQTQREELESLVAEKVMPL
DQAIEQLNSLMGQQQETVAEVVRRRDESSEQEKALSVQLKALREEIQAANEYLESRRSHK
LLPESLPLWRERLAQRTKARGELTKLAEAIKAREAEQRKQEVESGRLQEAQTEALKVLEE
HRRVVADTQKAILGVLSGETDAELRECLASMQKSRTDRFRLGRLADDYGKRRQELAELKA
QLQEREGELAQGKQSLLMMRKQYKAEKAHLDDLDRLMQKERQIASLSEHRSRLSPGEPCP
LCGSHEHPGIAAYEAQQESDTEKRLQEKRKQLQELEEKGKKLNEAAARLSSELEIGAGAR
GKLEREMTALQAEWTQLCGEFGVNLVIDAPAGAQNAVDVYLQKEEAKENALAERVRSLEQ
TEKQLQQAKESATAAEQELGEILRKLELQQRDLQNLSKEINAQLTQQAEQSAALSALEQG
VSEAFATLGYAMPRDEEQDAWLETRNAEAREYQARQEKLEQGVKQAGDLERQLEHAAEKA
TEIAQTLKGLQENLTQTQAALAEKKAQRQALFGDKSPTEERKRMQEQLAAAEKRWTTLQE
DKERADTALQQHLGREELLKTQLGSQRALLSDAERLWSEALAASRFADQTAFEQALLNEE
ERQALAVLKQELDQQKDRAATLKQRAEAELNELLATPATQLSEPELAEQLQTVADGLKAV
SQKQGEIRQLLQSDQTRRMSRQKLLVDIESQQQRYDDWAYLSSLIGAADGAKFRRYAQGL
TLDHLVYLANQHLSRLHGRYELERREGEALELQVVDTWQADTVRDTKTLSGGESFLVSLA
LALALSDLVSHKTSIDSLFLDEGFGALDSETLEVALDALDCLNASGKMIGVISHVEAMKE
RISVQIKVKKMSGLGVSRLDNRYCLESAM
NT seq
3690 nt
NT seq
+upstream
nt +downstream
nt
atgagaattttgagccttcgtcttaaaaacctgaactcactcaagggcgagtggaaagta
gatttcagagcggaccctttccatagtaatggattgttcgccattaccggcccgaccggc
gcaggcaaaaccacattgctggatgcgatctgtctggcgctgtatcaccagacgccacgg
atcaatgtctcgccgaccaacaacgaaattatgacccggcatacggcggagtgtctggcg
gaggtcgagtttgaagtcaaaggcgaggcctatcgcgccttttggagccaacggcgtgcg
cgcaatctggcggaaggccggtttcagccgccgcacgttgaactggcgacggcggacggc
aagatcctggcggataaagtgaaggataagctgacgctgatagccgagttaacaggcctg
gactttgctcgcttcactaaatccatgctgttggcgcagggcggcttcgcggcgttttta
aacgcccccgcaaacgaacgggctgaattgctggaagaactgaccggcaccgaaatctac
ggcaagatttccgccagggtatttgaacgccagcgtgatgcgaaaggagagctggaacga
ctgcgagccaaggcggaagggcaggatctgctcagtgacgatgagctgactgcgtattac
gaagaatcgacggctctcgaaactcaggaaaaaacagaagctgaacgcctggagtctttg
cgaacgcagaagcagtggctggaccgagttacccaggcgcagcagtcctttaaggaagca
gagctgcgactgactgaggcgaccgcgcggctggaacaggagaagaccgatctggggcgt
ttggctctaagcgaaccggctgagaaactgcgtcctttttataaagattaccagcaggcc
catgacgcgtatgcgcagacggaaaggcatatcaagtctctgacggaaagcctggaacta
gctcgagtagagctggagcgcaaatcttccgaactagctctggcgaaaaaagcattgatg
caactgcagacgcaacgtgaagagctggaaagcttggtagcggaaaaagtcatgccgctg
gatcaggctattgaacagctaaattccctgatgggacagcaacaggagactgttgctgag
gtagtgcgtcgtcgggatgaatccagtgagcaggaaaaagcgctcagcgtccagctaaaa
gcgttgcgggaggagattcaagcggcgaatgaatacctcgaaagcagacgctcccataag
ttgctgccggagagtctgccgttatggcgggagcgtctggcgcagcgaacaaaagccagg
ggcgaactgacaaaactggcggaggcgattaaggcgcgcgaggctgagcagcgtaaacag
gaagtggaatccggtcgtttgcaggaagcccagacggaggcgcttaaggtgcttgaagag
caccgccgggtggtcgcggacactcaaaaggcgatacttggcgttttatccggggaaacc
gatgccgagctgcgtgaatgtctggcgtcaatgcaaaaaagccggaccgaccgttttcgg
ttggggcgtctggcggatgattatggcaaacggcgacaggagctggctgagcttaaggcg
caattgcaggaacgtgagggagagctggcgcaaggcaagcaatctctgctgatgatgcgc
aagcaatataaggcggagaaagcgcacctggatgatcttgatcgtctgatgcagaaggaa
cgccagattgcgtctctcagtgagcatcgctcccgtctgagtcctggcgagccctgtccg
ctgtgcgggtctcatgaacatcccggtatcgctgcgtatgaggcgcagcaggagtccgac
acggagaaacgtctgcaggaaaagcgcaagcaacttcaggaactggaagagaagggtaaa
aagctgaacgaagcggcggcccggctgtccagtgagctggaaattggcgcaggcgcacgt
ggaaagctggagcgggaaatgacggcgctgcaggccgagtggacgcaattgtgcggtgaa
ttcggcgtaaatttggtcattgatgcgccggctggcgcgcaaaatgccgtggatgtctat
ttacagaaagaagaagccaaagaaaatgcgctggcggagcgtgtccgatcattggagcaa
acggaaaaacaattgcagcaggctaaagagtccgctactgctgcggagcaggaactcggc
gagattctcagaaaactggagctgcaacaacgcgacctgcaaaatctcagcaaagagatt
aatgcgcaactaacgcagcaggcggagcaaagcgctgcgctgagcgctctggaacagggg
gtgtcggaggcgttcgccaccttgggctacgcgatgccccgggatgaagaacaggatgca
tggctggaaacacgtaacgctgaagcgcgagagtatcaggctcgtcaagagaagctggag
cagggcgtgaagcaggcgggggatctggagcgtcagctggagcatgctgcggagaaagct
acggagattgcgcagaccttaaaagggttacaggaaaacttgacgcagacgcaagcggcg
ttggcggagaaaaaagcgcaacgtcaggcgctgttcggtgataaatcgccgacggaggag
cgcaagcgtatgcaagagcagttggcggcggcggaaaagcgctggaccacattgcaggaa
gacaaagaaagagccgacactgctttgcagcagcatttgggacgcgaggaattactgaag
acgcaattaggctcgcagcgcgccttattatccgatgccgagcgcttatggagcgaagcg
cttgcagccagccgctttgcggatcaaaccgcctttgagcaggcgttgctcaatgaagag
gagcgacaggcgctggcggtattgaagcaggaactggatcagcagaaggatcgggcggcg
acgttgaagcagcgggcggaagccgaactgaatgagctattggcgacgccggcgactcag
ctaagtgagcccgaattggcggagcagctacaaacggtcgccgatggcctgaaggcggtc
agtcaaaagcagggcgaaatcaggcagctcttgcaaagcgatcagactcggcgcatgagt
cggcaaaaactattggtagatattgagtcgcaacaacaacgttacgacgactgggcttat
ctgagcagtctgatcggggcggcggacggcgccaagttccgccgttatgcgcaagggctg
actttggatcatctggtgtacctcgccaaccagcatttgagtcgcttgcatggtcgctat
gaactggagcgtcgcgaaggcgaagctcttgagctgcaagtggtggatacctggcaggcg
gataccgtcagagacaccaaaaccctgtcaggtggagaaagcttcctggtgagcctggcg
ttggcgctggcgttgtcagacctggtgagtcataaaaccagcatcgactcgttatttctg
gacgaaggctttggcgccctggacagcgagacactggaggtggcgctggacgcactggat
tgcctgaacgcaagcggcaagatgatcggcgtcatcagccatgtagaggcgatgaaagag
cgtatttccgtacagatcaaagtgaagaagatgagcggattgggcgtcagccggttggat
aaccgatattgcctggagagcgccatgtag
DBGET
integrated database retrieval system
