Hahella chejuensis: HCH_01244
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Entry
HCH_01244 CDS
T00307
Symbol
pnp
Name
(GenBank) Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase)
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
hch
Hahella chejuensis
Pathway
hch03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hch00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HCH_01244 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hch03019
]
HCH_01244 (pnp)
03016 Transfer RNA biogenesis [BR:
hch03016
]
HCH_01244 (pnp)
Enzymes [BR:
hch01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
HCH_01244 (pnp)
Messenger RNA biogenesis [BR:
hch03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HCH_01244 (pnp)
Transfer RNA biogenesis [BR:
hch03016
]
Prokaryotic type
tRNA degradation factors
HCH_01244 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
KH_2
KH-I_KHDC4-BBP
S1_RRP5
OB_RRP5_4th
S1_2
DUF3016
Motif
Other DBs
NCBI-ProteinID:
ABC28115
UniProt:
Q2SMK9
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All DBs
Position
1256303..1258414
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AA seq
703 aa
AA seq
DB search
MNPVRKTFQYGNSTVTLETGRIARQATGAVLVTMDDTVVLVTAVAEKEAVPGRDFFPLSV
HYQEKTYAAGRIPGGYFKREGRPSEKETLTSRLIDRPIRPLFPDGFMNEVQIICTVMSAN
KDVDPDIASIIGAAAALEISGVPFQGPLAAARVGYTDEDGYLLNPGFKAIENSKLDMVVA
GTEDAVLMVESEAKELTEDQMLGAVLFAHQEMQVAVQAIKEFAQEAGKPKWDWQAPEVNA
ELLEALKAKFAGSIGEAYGIRVKADRYAKLGELRQQAEEELAGEEEGKFEAELVKKYFSK
LEKACVRQNIIKGEPRIDGRDTKTVRDLKIEVGVLPNTHGSALFTRGETQALVTATLGTM
RDVLMVDALEGEKKDSFMFHYNFPPYSVGEASRVGGVGRREIGHGRLARRGVQALMPNLE
EFPYAVRCVSEITESNGSSSMASVCGSSLALMDAGIPVKAPVAGIAMGLVKEGDSFAVLT
DILGDEDHLGDMDFKVAGTEKGVTALQMDIKINGITDEIMEIALEQALHARLHILGEMNK
VISEPRDSVADNAPKMETIKIDPDKIRDVIGKGGATIRSICEDTGASIDIDDNGTVRIYA
ESKLAADEAIYRITEITAEAEVGKLYRGKVERIVEFGAFVNILPGKDGLVHISQIAQERV
ENVTDYLKEGQEVVVKVLDIDARGRIKLSMKEVTEDEKASMAG
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
gtgaacccagttcgtaaaacatttcaatacggcaactcaacagtcactctggaaactggc
cgtatagctcgccaggctactggagccgtgttggtgacaatggacgatactgttgttttg
gtcaccgctgttgcagaaaaagaagctgttccaggtcgtgatttctttcctctttctgtt
cactatcaggaaaaaacctatgcagctgggcgtattccaggcggttactttaagcgtgag
gggcgtccatcagagaaagaaactctgacttccagattgatcgaccgccccatccgcccg
ctgtttccagatggtttcatgaatgaagtacaaatcatttgtactgttatgtcagcaaac
aaagatgtcgatccagatatcgcctccattattggcgcggcggctgcgttggaaatttcc
ggcgttcccttccaaggtccactggcggctgcgcgcgttggttacactgacgaagatggt
tacctgctgaatcctggcttcaaggcaattgaaaactctaagttggatatggttgtcgca
ggtaccgaagatgcggttctgatggttgagtcggaagcgaaagagttaacagaagaccag
atgcttggcgcagtattgttcgctcaccaggaaatgcaggtggctgtgcaggcgattaaa
gagtttgctcaggaagctggtaagcctaaatgggattggcaggcgccggaagttaatgct
gaacttttggaggccttgaaggccaaatttgccggctctatcggtgaagcttatggcatc
cgcgttaaagctgatcgttacgctaagttgggcgagcttcgtcaacaagcggaagaagag
ctggcgggtgaagaagaaggcaagtttgaagctgaactggtcaagaaatacttcagcaag
cttgagaaggcttgtgtccgtcagaatattattaagggtgagccacgtattgacggtcgt
gataccaaaacggttcgtgacctgaaaattgaagttggcgtactgccgaacacccacggt
tccgcattgtttacgcgtggagagactcaggctctggtaacagcgactctgggtactatg
cgtgatgtattgatggtggacgcgttggaaggtgagaagaaagactcattcatgttccac
tataactttcctccatactctgtgggtgaagcatcccgagttggcggtgtaggtcgccgc
gagatcggtcatggtcgtttggcgcgtcgtggcgtacaagcgttgatgccgaatcttgag
gaattcccctacgcagtacgctgcgtctctgagattacagagtcaaatggctctagctca
atggccagcgtatgcggcagcagcctggctctgatggatgccggtattcctgttaaagct
ccagttgcaggcattgcaatgggcttggtcaaagaaggcgacagctttgctgtattgact
gatatcctgggtgatgaagatcacttgggcgacatggacttcaaagtagcgggaaccgaa
aaaggtgttaccgctctgcaaatggatatcaagatcaacggcattaccgacgaaatcatg
gaaattgcgttagagcaagctctgcatgcgcgactccatatcctcggtgaaatgaataaa
gtgatttccgaaccacgagactccgttgcagataacgcgccgaagatggaaaccatcaag
atcgatccggataaaatccgtgacgttatcggtaagggcggcgccactattcgttctatc
tgtgaagacacaggcgcttctatcgatatcgacgacaatggtactgtgcgtatttacgcg
gaaagcaagctggcggcggatgaggctatttaccgtatcaccgagatcacggctgaagcg
gaagttggtaagctgtatcgcggcaaggttgagcgtattgttgagttcggcgcgtttgta
aacatcctgcccggtaaagacggtctggtgcatatttctcagatcgcgcaagaacgtgta
gagaacgtcactgattatcttaaagaaggtcaggaggtcgttgttaaggtgctggatatt
gacgctcgtggccgtatcaaactttctatgaaggaagtgactgaagacgaaaaagcttca
atggctggttaa
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