Hahella chejuensis: HCH_01861
Help
Entry
HCH_01861 CDS
T00307
Symbol
dnaE1
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
hch
Hahella chejuensis
Pathway
hch03030
DNA replication
hch03430
Mismatch repair
hch03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hch00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HCH_01861 (dnaE1)
03430 Mismatch repair
HCH_01861 (dnaE1)
03440 Homologous recombination
HCH_01861 (dnaE1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hch03032
]
HCH_01861 (dnaE1)
03400 DNA repair and recombination proteins [BR:
hch03400
]
HCH_01861 (dnaE1)
Enzymes [BR:
hch01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HCH_01861 (dnaE1)
DNA replication proteins [BR:
hch03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HCH_01861 (dnaE1)
DNA repair and recombination proteins [BR:
hch03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HCH_01861 (dnaE1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
T2SSK
HROB
HHH_3
HPD
Motif
Other DBs
NCBI-ProteinID:
ABC28698
UniProt:
Q2SKX6
LinkDB
All DBs
Position
1888512..1891988
Genome browser
AA seq
1158 aa
AA seq
DB search
MGDFIHLRIHTEFSLVDGLVKVKPLVKKLADMGMPAVAVTDQSNMCCLVKYYKAASGAGV
KPIVGADVWVENLDDPLAPFRLTLFARNETGYRNLTELISRGFTEGQSHGRAIMKKDWIA
AQAEGLLALSGSKYGDVGQALLAGKQELARERLGVWMEMFPDAYYLELQRTGRINDEECV
HASVELALETGCPVVATNDVHFLERDDFEAHEARVCIHEGRTLDDPRRERRFSEEQYLKT
AEEMCELFSDIPEAIANTVEIAKRCNVSLRLGKYFLPNYPIPEGMTIDEFFIKVSEEGLE
ERLATLLKQDDPEYGNKRQSYYDRLKFELDIITQMGFPGYFLIVMDFIKWAKNNGVPVGP
GRGSGAGSLVAYALKITDLDPLAYDLLFERFLNPERVSMPDFDVDFCMEGRDRVIAYVAE
AYGRNAVSQIITFGTMAAKAVVRDVARVQGRPYSMGDRLSKLIPFEVGMTLAKAYEQEEP
LREYLTTDEDAAEIWEMARKLEGVTRNVGKHAGGVVIAPTKLTDFAPLYCDETGSGLVTQ
FDKDDVEQAGLVKFDFLGLRTLTIVDWAVDIINRQHAEKGQPPLDINFIPLDDAPTFNLL
KHGETTAVFQLESRGMKELIRRLMPDCFEDIIALVALFRPGPLQSGMVDDFINRKHGRAE
LAYPHPDYQLESLKPVLQPTYGIILYQEQVMQIAQVMAGYTLGGADLLRRAMGKKKPEEM
AKQKAIFVEGSINQGLEQDLAEKIFDLVEKFAGYGFNKSHSAAYALVSYQTAWLKCHYPA
PFMAAVLTADMQNTDKVVTLVEECRRMKLELVLPDVNNSSYTFTVDDKHRIVYGLGAVKG
LGEGPVQSILDARKEGGPFRDLFDFCQRVDLRRVNKRALEALVRSGAMDKLGPSRARMMA
SINEAVRRADQHSRNEDAGMLDLFGEVVPETDPNPYSATEGMQEWSDKERLKLEKETLGL
YLTGHPFDEYEQEVRRFVRTPISELRPGKSPQNVAGLVVAVRTMKSKRGGYIGFATLDDR
SGRIEVTFFSDAYEQAKEMLHNDRILVVEGVVGEDDYSGGLSVRAKMTSDIGQARLKFAK
ELILFVHEKDFNNGFIDELGGVLGEHRAEGCPVLINYETETARTRLRLAEDWRVNPSDEL
IQGLRYLLGKERVQLRYS
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgggcgattttattcatttacgcatccatacagagttttccctggttgacgggctggta
aaggtcaagcccctggtcaaaaagctggccgacatgggcatgcccgcggtggcggtgacc
gaccagtccaacatgtgctgccttgttaaatattacaaagctgcgtccggcgcaggcgta
aagccgattgtcggcgcggatgtctgggtcgaaaacctggatgaccctctggctcccttt
cgtctgacgttgttcgctcgcaacgaaactggctatcgtaatctgacggaactcatatcc
cgcggctttaccgaaggtcagtcccatggccgcgccataatgaaaaaagactggatcgcc
gcacaggcggaaggcctgctggcgctttccggctccaagtatggcgatgtggggcaagct
ctgttggcggggaaacaggaactggcgcgagagcgcctgggcgtttggatggaaatgttt
ccggacgcctactatctggagctgcagcgcacggggcgaattaacgatgaagagtgcgtg
cacgcctctgtggaattagcgctggagactggctgcccagtggtggccaccaacgatgtg
cattttcttgaacgtgacgactttgaggctcatgaagcgcgggtctgtattcacgaaggc
cgcactctggatgatccgcgcagggagcgccgctttagtgaagagcagtatctgaaaaca
gcggaggaaatgtgcgagctgttctcggacattcccgaggcgatcgccaataccgtggag
atcgccaagcgctgcaacgtcagtttgcgtttgggtaaatacttcctgccgaattatccc
ataccggaagggatgactatcgatgagtttttcatcaaggtttcggaagaagggcttgag
gagcgactggcgacgctgctcaaacaagatgacccggagtacggcaataaacgccaaagc
tattatgatcggctcaagtttgagctggatatcattactcagatggggtttcccggttac
ttcctcatcgttatggacttcatcaagtgggccaagaacaacggcgtgccagtggggccg
ggacgggggtccggcgccggctctctggtggcgtatgcgctaaaaatcaccgatttggac
cctctcgcctacgacttgctgttcgagcgattcctgaaccctgagcgggtgtcgatgccg
gactttgacgtcgacttctgtatggaaggccgcgaccgggtcatcgcttatgttgccgaa
gcctatgggcgtaatgcggtgtcccagatcattacctttggaaccatggcggcgaaggcg
gtagtgcgggacgtggcgcgggtgcaggggcgtccgtactccatgggcgaccgtctgtcc
aaactaatcccctttgaggtggggatgactctggccaaggcctatgaacaggaagagccg
ctgcgggaatatctgactacggatgaagacgcggcggaaatctgggagatggcgcgcaag
ctggagggcgtgacccgtaacgtcggtaagcatgcggggggcgtggtgatcgcccccacc
aagctgaccgactttgcccctttgtactgtgacgaaacggggtcgggcctggtcacccag
ttcgataaggacgacgtagagcaggcgggtctggttaagttcgacttcctggggttgcgt
acgctgaccatcgttgactgggcggtggacattatcaatcgccagcatgcggaaaaaggc
cagccgcctctggatatcaactttattccgctggatgacgcgcccactttcaatctgctc
aagcatggtgaaaccaccgcggtgttccagcttgaatcccgtgggatgaaagaacttatc
cggcgcctgatgccggactgttttgaagacatcatcgctcttgtggccctgttccgcccg
gggccgctgcaatcgggcatggttgacgactttatcaaccgtaagcatgggcgtgcggaa
ctggcgtacccccatccggactatcagctggagtctttgaaacccgtcttacagcccacc
tacggcattatcctgtaccaggaacaggttatgcagatcgcccaggttatggcgggatac
accctcggcggcgcagacttgctgcgccgggcgatgggtaaaaagaaacctgaggaaatg
gccaagcagaaggcgatcttcgttgaagggagcatcaaccagggtcttgagcaggatctg
gcggaaaagatcttcgacctggtggaaaaatttgcgggttacggcttcaacaaatcgcac
tccgccgcctacgccttggtgtcgtaccagaccgcatggctcaagtgccactatcctgcg
ccattcatggcggcggtgcttaccgcggatatgcagaacaccgacaaagtggtgaccctg
gtggaagagtgccggcggatgaagctggagttggtgttgccggacgtcaataacagtagc
tataccttcacggtcgacgataagcatcgcatcgtctacggcctgggcgccgtaaaaggg
ctgggtgaaggccccgtacaaagtattttggacgctcgtaaagaaggcgggcccttccgc
gacctgttcgacttctgccagcgggtggatttgcggcgggtcaacaagcgcgccttggag
gcgctggtccgctccggcgccatggacaaattggggccgagccgcgcccgcatgatggcg
tccatcaatgaggcggtgcgtcgcgccgaccaacattcccgcaatgaagacgccggtatg
ctggacctgtttggcgaggtcgtgccggaaacggacccgaatccatacagcgcaacggaa
ggcatgcaggaatggagcgataaagagcgtctgaaattagagaaggaaactctgggactc
tatctgaccggacatccgttcgacgaatatgaacaggaggtgcgtcgcttcgtgcgtacg
cctatttcggagttgcgtcccggcaagagtccgcaaaatgttgcgggcctggtggtggcg
gtgcgcacgatgaaaagcaagcgcggcggatacataggttttgctacgctggatgatcga
agcggccgtattgaggtgacttttttctccgacgcctacgagcaggccaaagaaatgttg
cacaacgaccgcattctggtggtggaaggcgttgtcggcgaagacgactactccggtggg
ctttctgtccgggcgaaaatgacctcggacattggtcaggcgcgattgaagttcgccaaa
gagcttattctctttgtacacgaaaaagactttaataacggctttattgacgaactgggc
ggcgttttgggagaacatcgcgccgagggctgcccggttttgatcaattatgaaacggaa
accgcccgcaccagactgcgtctggcggaagactggcgggttaatccaagcgatgaattg
attcaggggctgcgatatttgttgggcaaggagcgggtgcaactgcgctacagttga
DBGET
integrated database retrieval system
