Hahella chejuensis: HCH_03195
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Entry
HCH_03195 CDS
T00307
Name
(GenBank) RTX toxins and related Ca2+-binding protein
KO
K20276
large repetitive protein
Organism
hch
Hahella chejuensis
Pathway
hch02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
hch00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
HCH_03195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Big_9
Cadherin_4
Cadherin_5
Big_13
K319L-like_PKD
Big_12
Big_5
OmpA_membrane
TSP3_bac
PKD_4
Motif
Other DBs
NCBI-ProteinID:
ABC29956
UniProt:
Q2SHB8
LinkDB
All DBs
Position
3291104..3300889
Genome browser
AA seq
3261 aa
AA seq
DB search
MTLTDPAGNAATAVTNTSTLDKTAPTGHSVSFDDSTISSTEASSQSFTFASAEVGANYSY
SISSSGGGTAVTGSGSVTSASQQIASLDLSGLNDGTLTLSVTLTDTAGNAATAVTDTATL
DKTAPTGHSVSFDDSTISSTEASSQSFTFASAEVGAGFSYSISSSGGGTAVSGSGTVTGA
SQQVTGINLSGLNDGTLTLSVTLTDPAGNAATAVTDTATLDKTAPTGHSVSFDDSTISST
EASSQSFTFDSAEVGANYSYSISSSGGGTAVTGSGSITSASQQIASLDLSGLNDGTLTLS
VTLTDPAGNAATAVTDTATLDKTAPTGHSVSFDDSTISSTEVSSQSFTFASAEVGANYSY
SISSFGGGTAVTGSGSITSASQQIASLDLSGLNDGTLTLSVTLTDTAGNAATAVTDTATL
DKTAPNGHSVSFDDATVNATEAASQSFTFASAEVGAGFSYSISSSGGGTAVSGSGSVTSA
SQQVTGLNLSGLNDGTLTLSVILTDAAGNTATAVTDTATLDKTAPTGHSVSFDDSTISST
EVSSQSFTFASAEVGANYSYSISSSGGGTAVTGSGSVTSASQQIASLDLSGLNDGTLTLS
VTLTDTAGNAATAVTDTATLDKTAPTGHSVSFDDSMISSTEATSQSFTFASAEVGAGFSY
SISSSGGGTAVSGSGTVTGASQQVTGLNLSGLNDGTLTLSVILTDAAGNAATAVTDTATL
DKTAPTGHSVSFDDSTISSTEATSQSFTFASAEVGAGFSYTISSSGGGTAVSGSGSVTSA
SQQVTGINLSGLNDGTLTLSVTLTDTAGNAATAVTDTATLDKTAPSGHSVTFDDSTISST
EASSQSFTFASVEVGANYSYSISSSGGGTAVTGSGSVTSASQQIPGINLSGLPDGTLTLS
VTLTDTAGNTSTAVTDTATLDKTAPTGHSVSFDDSIISSTEASSQSFTFASAEVGAGFSY
SISSSGGGTAVSGSGSVTSASQQVTGLNLSGLNDGTLTLSVILTDAAGNTATAVTDTATL
DKTAPNGHSVSFDDSTISSTEATSQSFTFASAEVGANYSYNISSSGGGTAVTGSGTIASA
SQQVTGLNLSGLNDGTLTLSVTLTDPAGNAATAVTDTATLDKTAPNGHSVSFDDAMINAT
EAASQSFTFASAEVGASYSYTISSSGGGTAVTGSGSVTSASQQIAGLDLSGLSDGALTLS
VTLTDVAGNAAMATTDTATLDTASPTGQTVSFDDGAINATEAASQSFTFAGAEVGATFSY
SIASAGGGTEVTGNGSITNASQQVTGVNVSGLSDGTLTLSVVLTDAGGNAATAVTATATL
DATAPSLAETTPVSTPTSDTTPNVSFSNTEAGTLAVGGSCGSAAEGAAPSGTQTITLTGT
DNSSALADGTYSGCTLTVTDAAGNASPALTLTSFTVDSTAPSGFSVAFSDTTLNASEASA
GAFVFTAGEVGAEYNYSVTSSGGGSAITGSGTLSSASQNISLASLSGLSDGALTLSVTLT
DVTGNVSAAQTASATLDASAPTPNLSSTASDPANAAFTVSISFGETVSGFAVSDIVAANA
ILSAFTDNGGGSYSVTATPSADGAVTLDIAADVAEDAAGNANAAATQFSIVYDGTAPTPA
ISSSADNPTSAAFSAAIAFGESVSGFAIDDIAAGNASLSGLTDNGGGSFSVTVTPIADGA
VTLDIAADAAQDAAGNNNAAAAQFSLTYDGSGPTLQSSTPANGAVDVEYNATLSFTFDED
LAIGSGSATQISLYRAADDELVEAIEISSAQVSVSGSTVTVAPAENFTPNRAYYVRIGAE
ALTDTLGNAYAGLSGGLSFTVGNHVPSAVADTVETDEDNAISIQVLANDSDVDSQLNPAS
VLVSTAPNHGAVSVNTGTGVVTYEPEADYNGADSFSYTVEDVHGGISSAALVSITVTAVN
DAPVAMADVASTDEDTMASIDVAANDTDIDDVVDATTLAIVATPSHGAAVVNAGKIDYTP
DIDFNGSDSFTYSVKDGQGALSNVASVIVNVTGVNDLPNAANDSVTTDEDTSVNISVLDN
DADVDGSLQASTVTVIANASHGVASVNAGSGVIQYEPAANYNGADSFTYIVKDNEGAASN
IATVAVTVNSVNDAPVALDDAATLLEDSAHTINVLGNDSDVDGTIQPATVEIMEAPLYGD
VSIDAGTGAVSYTPSSDFSGVDQFLYRVQDDGGDWSNNATVALTIESLNDAPLANDDSAA
TNEDAPVVIAVLDNDQDVDGVLDASAIRIESAPGLGTVTDNGDGTLTYTPNANEFGADSF
EYSVKDDEGDSSNTATVTLSIAPVNDAPAISGTPTTSILEGQAYRFMPTLSDVDSGALTV
TAANRPGWLSLNAVTGALSGTPPVGAAGVYSGIVLSVSDGQASTSLAAFSVTVIGDNDTD
GAANDVDTDDDNDGMSDSFELLYGFNPFDSSDAAEDLDGDAISNYQESVDNTNPNDASDY
VDTTPPVVVAPEDITIDAIALYTPVTLRQMLGLASNASDADVEAILAVLATDNVDGDNCC
SVRAQGLLNNTALLPPGRNFITYRGVDRKGNAATATQVVNIRPLVSVNKDQISVEGATVQ
FRVILNGESPFYPLTIPYLIDGFSTASVSDHDLSNGGVTFTKSGNIGQTEVSVSIALTAD
SITENEERLIIRLDDRTSNGEDLAGGYDPTNIYDINAGAKISHVITIVERNVAPDVTLRL
RQNGLDTIQVTPEGGPVTVVATVTDPNPGDTHRYNWTATDNSLADTDGNTGNNQLVFNPA
GLASGRYKVQLTVADSSNATDEARLYFRIVAALPTLDPTVDSDGDGVNDAEEGVADGDDD
GIPDYLDNIVATNVLPEVASETSSYLVECDPGVRCRLGQFAILGANGGARLEPEELQTLP
DIRTDDLFEPLGGVFDFEVHELPTLGQSVRVVLPQDQPLPANGVYRKFQNNSWTTFVVDA
NNALHSAPGNPGYCPPPGDDSWETGLISGYYCLQLTIEDGGPNDADGLVNAAVEDPGVVA
VDKRTPSDIESEGGGSGGGAINGTLLLALLGLSILSRRYLQLRTSVLAVFLMVSLGAPDV
SHAADWEAMKTRLQDRGYLEFGAYHVSGSQEAGEFKRGLENEDVTVGVNNYDVSRYGYQF
LAGYRYHQHMAAEIGFLDLGNVKVNMSASALTPETLEDAVEKHYPVSGSGWTLSNRFLWP
VREKITLSAEVGLFLWEGDIQLSGADINPDLKGDADPLLGLGLNYRLHKNIDASVRLKRA
FFEGQHADLMGVGVIWRFKGD
NT seq
9786 nt
NT seq
+upstream
nt +downstream
nt
gtgaccttgaccgatcctgctggcaacgccgctacagcagtcacgaacaccagcacgctg
gataaaaccgcgccgacgggccacagcgtgagctttgacgacagcacgatcagctccact
gaagcgagcagccagagcttcaccttcgccagcgcagaggtcggcgctaactatagctat
agcatcagcagttctggtggaggaacggcggtgaccggctccggctcggtgaccagcgcc
agtcagcagatcgccagtctggatctgtctggcttgaatgatggaacgctcacactgtca
gtgactctgactgataccgccggcaacgcggctaccgcagtcaccgatacggcgacgttg
gataaaaccgctccgacgggccacagcgtgagctttgacgacagcacgatcagctccact
gaagcgagcagtcaaagttttaccttcgccagcgcggaagtaggcgcgggtttcagttac
agcatctcatccagcggcggtggaaccgccgtcagcggtagcgggacggtaaccggcgcg
agtcagcaagtgacggggatcaacctgtctggcttgaacgacggaacgctcacactatca
gtgactctgaccgatcccgccggcaacgcggctaccgcagtcaccgatacggcgacgctg
gacaaaaccgcgccgacggggcatagcgtgagctttgacgacagcacgatcagctccact
gaagcgagcagtcagagctttaccttcgacagcgcagaggtcggcgctaactatagctat
agcatcagcagttctggtggaggaacggcggtgacaggctccggctcaatcactagcgcc
agccagcaaatcgccagtctggatctgtccggcttgaatgatggaacgctcacactgtca
gtgactctgaccgatcccgccggcaacgccgccaccgcagtcaccgacacggcgacgctg
gataaaaccgcgccgacgggccacagcgtgagttttgacgacagcacgatcagctccact
gaagtgagtagtcagagcttcaccttcgccagcgcagaggtcggcgctaactatagctat
agcatcagcagttttggtggaggaacggcggtgacaggctccggctcaatcactagcgcc
agccagcaaatcgccagtctggatctgtccggcttgaatgatggaacgctcacactgtca
gtgactctgactgataccgccggcaacgcggccaccgcggtcacggatacggcgacgctg
gataaaaccgcgcccaatggccacagtgtgagttttgatgacgctacggtcaatgcgacg
gaagcggcgagtcagagcttcaccttcgccagcgcggaagtaggggcgggtttcagttac
agcatctcatccagcggcggtggaaccgccgtcagcggtagcggatcggtaaccagcgcg
agtcagcaagtgacggggctcaacttgtctgggctgaacgacggaacgctcacgctgtcg
gtcattttgaccgatgcagccggcaacaccgctacggctgttaccgatacggcgacgttg
gataaaaccgcgccgacgggccatagcgtgagctttgacgacagcacgatcagctccact
gaagtgagtagtcaaagttttaccttcgccagcgcagaggtcggcgctaactatagctat
agcatcagcagttctggtggcgggacggcggtgacaggctccggctcggtgaccagcgcc
agtcagcagatcgccagtctggatctgagcggcttgaatgatggaacgctcacgctgtca
gtgactctgaccgataccgccggcaacgcggccaccgcagtcaccgatacggcgacgttg
gataaaactgcgccgacaggtcacagcgtgagctttgacgacagtatgatcagctccact
gaagcaaccagtcagagcttcaccttcgccagtgcggaagtaggggcgggtttcagttac
agcatctcatccagcggcggtggaaccgccgtcagcggtagcgggacggtaaccggtgcg
agtcagcaagtgacggggctcaacctgtctggtctgaacgacggaacgctcacgctgtcg
gtcattttgaccgatgccgccggcaacgcggccactgcggtcacggatacggcgacgttg
gataaaactgcgccaacgggccacagcgtgagctttgacgacagcacgatcagctctact
gaagcaaccagtcagagcttcacctttgccagcgcagaagtaggcgcgggtttcagttac
accatctcatccagcggcggtggaaccgccgtcagcggtagcggatcggtaaccagcgcg
agtcagcaagtgacggggatcaacctgtctgggctgaacgacggaacgctcacactgtcc
gtgactctgactgataccgccggcaacgcggctaccgcagtcaccgatacggcgacgctg
gataaaaccgcgcccagcggccacagcgtgacctttgacgacagcacgatcagctccact
gaagcgagcagtcagagttttaccttcgccagcgtagaggtcggcgctaactatagctat
agcatcagcagttctggtggaggaacggcggtgacaggctccggctcggtgaccagcgcc
agtcagcagattcccggtattaatctcagcgggttgcctgatggaaccttaaccctgtcg
gtcactttgaccgatactgccggcaacacctccacggctgtcaccgacacggcgacgctg
gataaaaccgcgccgacgggccacagcgtgagttttgacgacagcataatcagctccact
gaagcgagcagtcagagcttcaccttcgccagtgcggaagtaggcgcgggtttcagttac
agcatctcatccagcggcggtggaaccgccgtcagcggtagcggatcggtaaccagcgcg
agtcagcaagtgacggggctcaacctgtctgggctgaacgacggaacgctcacgctgtcg
gtcattttgaccgatgcagccggcaacacagctacggcggtcaccgacacggcgacgctg
gataaaaccgcgcccaatggccacagcgtgagctttgacgacagcacgatcagctctact
gaagcgaccagtcaaagcttcaccttcgccagcgcggaggtcggcgctaactatagctat
aacatcagcagctccggcggcggaacggcggtgaccggaagcggaactatcgccagcgcc
agccagcaagtgacggggcttaacctgtctggactgaacgacggaacattgaccctgtcc
gtgaccttgaccgatcccgccggcaacgccgccactgctgttacagatacggcgacgctg
gataaaaccgcgcccaatggccatagcgtgagttttgacgacgctatgatcaatgcgacg
gaagcggcgagtcaaagcttcactttcgccagcgcagaagtgggggccagttacagctat
accatcagcagttctggcggaggaacggcggtgaccggttccggctcggtgaccagcgcc
agtcagcagatcgccggtctggatctgagcgggctctctgacggcgccctgaccttgtcc
gtcaccttgacggatgtcgccggcaacgcggcgatggcgaccacggatacggcgaccttg
gatacggcttcgcccaccgggcagacggtgagcttcgacgatggcgccatcaacgccaca
gaagccgccagccaaagcttcactttcgctggcgcggaggtgggggcgacgttcagctac
agtatcgccagtgccggaggagggaccgaggttaccggaaatggttcgatcaccaacgcg
agccagcaggtgacaggagtgaatgtgagcggactttccgatggaacattgacgctgtcc
gtggtgctcacggatgccggcggcaatgccgccactgctgtgaccgccaccgcaaccctg
gacgccacggcgccgagtctggcggaaaccacgccggtgtcgacgccgacgtcggatacc
acgccgaacgtcagtttctccaatacggaagcggggacgttggcggtgggcggcagttgc
ggcagtgcagcggaaggcgctgcgccttcaggaacgcagacgatcactttgacgggaacg
gataacagcagcgctctggcggatggaacctattccggctgtacgttgacggtgaccgac
gccgcaggcaacgccagtccggcgctgaccttgaccagcttcacggttgactccaccgcg
ccgtccggtttctcagtggctttcagcgacacgactctcaacgccagcgaagccagcgcc
ggcgcttttgtcttcactgccggcgaggtaggcgcggaatacaactacagcgtcacttcc
agtggggggggaagcgccataaccggttctggaaccttgagcagcgcaagtcagaatatc
tctctcgcaagcctgtcgggattgagcgatggtgcgctgacgctatccgtgacgctgacg
gacgttaccggaaatgtcagcgcagcgcagaccgccagtgcgacgctggacgcctcggcg
ccgacgccgaatctcagcagtacagcctccgaccccgccaatgcggcgttcaccgtttcc
atcagctttggcgagaccgtcagcggcttcgctgtcagcgatattgtcgccgccaacgcg
atcctgagcgctttcactgataatggcggcggcagctacagcgtgacggcgacgccgtcc
gcagatggcgcggtgactttggacatcgccgcagacgtggccgaagacgcagctggcaac
gccaacgccgcggcgacgcagttcagcatcgtctatgacggcacagcgccgacgccggcg
atcagctcgtccgccgacaatccaaccagtgcggcattttctgcggccattgcatttggc
gagagcgtcagcggctttgcgatagacgatatcgcggccggcaacgccagtctgagcgga
ctcaccgacaacggcggaggcagtttcagcgttaccgttacgccgatcgctgacggcgcc
gtaaccctggatatcgccgccgacgcagcccaggatgcagcgggtaataataacgccgcg
gcggcccagtttagcctgacctacgacggcagtggtccgacgctgcaaagctccactccc
gccaacggcgcagtggatgtggaatataatgcgaccttgtcgtttaccttcgacgaggat
ctggcgatcggctccggctccgccacccagatcagcctgtatcgcgcggcagacgatgag
ttggtggaagccattgagatcagctccgctcaggtctctgtcagcggatcgacggtcacc
gtcgctccggcggaaaactttacgccaaaccgcgcgtattacgtacgcatcggcgccgag
gcgttgaccgataccctgggcaacgcctatgccggattgagcggcgggctcagcttcacc
gtggggaatcatgttccttccgccgtcgcggatacggtggaaacggacgaagacaacgcc
atttccattcaggtcctggccaatgacagcgatgtggacagccagctcaacccggccagt
gtattagtctccactgcgccgaatcatggcgctgtcagcgtgaataccgggacaggcgtc
gtcacttatgaacctgaggccgactacaacggcgctgacagctttagctataccgtggag
gatgtgcatggcgggatctcttccgccgccctggtctctattaccgtgacggcggtcaac
gatgcgccggtggcgatggcggatgtcgcctcgactgatgaagacacgatggcgtccatt
gatgtcgccgccaacgatacggacattgatgacgtagtggatgcgacgacgttggcgatt
gtcgccacgccgtctcatggcgcggcggtggtgaacgccggtaagatcgattacacgccg
gacattgattttaacggaagcgacagcttcacctacagcgtgaaagacgggcagggcgct
ttgtccaatgtggcctcggtgatcgtcaacgtgacaggcgtcaacgatttaccgaacgcc
gccaatgacagtgtgacaacggacgaggacacgtctgtcaatatctccgtgctggacaac
gacgcggatgtagatggttcactgcaagcgtcaaccgtcacggttattgcgaacgccagc
catggcgtcgccagcgtcaacgcaggctccggcgtgatccagtatgaacctgcggcgaac
tacaatggcgcagacagcttcacctatatcgtaaaagacaatgaaggcgccgcctccaat
atcgccacggtcgccgttacggttaacagcgtcaacgacgcccctgtggctttggatgac
gcagcgacgctactggaagacagtgcgcataccatcaatgtattgggtaatgacagcgat
gtggacggaaccatacagccagccaccgtagagataatggaggctcctctttatggcgac
gtcagcatcgacgccggcactggcgcggtcagttatacgccctccagcgactttagcggc
gttgatcaattcctctatcgggttcaggacgacggcggagactggtcaaacaacgcgacg
gtggcgctgacgattgaaagtctgaatgacgcccccctcgccaatgacgacagcgcggcc
accaatgaagacgcccctgtggtgatcgcagttctggataatgatcaggacgtggacggc
gtactggacgcgtccgctatccgtatcgaaagcgcgccaggcttgggaacggtgacggac
aacggagacggcacattgacttacacgcccaacgccaatgagttcggcgctgacagcttc
gaatacagcgttaaagatgacgagggcgatagttccaatacggcgacggtgaccctctcc
atcgcgccggtcaacgatgcgccggctatcagtggaaccccgacgacgtctattttggaa
gggcaggcataccgcttcatgccgacgctgtctgatgtggacagcggcgcgctgacggtc
actgcggcgaaccggccaggctggttgagtctgaacgcagtcaccggcgccttaagtgga
acgccgccggttggcgccgccggcgtatacagcggcatcgtcctgagcgtcagcgatggc
caggcctcaacgtctctggcggcgttcagcgtcactgtcattggcgacaacgatacggac
ggcgcggccaatgacgtcgatacggatgacgacaatgacggcatgagcgacagcttcgaa
ttgctgtatggctttaaccccttcgacagcagcgacgcggcggaggatctggacggagac
gcgatcagcaattatcaggagtccgtggacaacaccaacccgaacgacgccagcgattac
gtcgataccacgccgccggtggtggtcgcgccggaagacatcactattgacgcgatagcg
ctgtacacaccggttacgttgagacagatgttggggctggcgtccaatgcttcggacgct
gatgtggaagctattctggcggtattggcgacggataatgtggatggcgacaattgctgc
agcgtgcgggcgcaggggctgttgaacaataccgcgttgttgccgccaggacgcaatttc
attacctatcgcggcgtggaccgcaaaggcaatgcggcgaccgccacgcaggtcgtcaat
attcgtcccctggtgtcggtaaataaggatcagatcagcgtggaaggcgcgaccgtacag
ttccgggtgattctgaacggagagtcgccgttctatccgctgacgatcccttaccttatc
gatggtttcagcaccgcttccgtcagtgatcacgatctcagcaacggcggcgtcaccttc
actaagtccggcaatattgggcagacggaggtcagcgtcagcattgcgctaaccgcggac
agcattacggagaacgaggagcgtctgattatccgcctggacgaccgcacctccaatggg
gaagatctggcgggcggctatgatccgaccaatatctacgacatcaatgcaggcgccaaa
atcagccatgtcattactatcgttgaacgcaatgttgcgccggacgtgacattgcgtctg
cgccagaatgggctggacaccattcaggtcactcccgaaggagggcctgtaacggttgtc
gccaccgtcacagatcctaatccgggcgatacgcatcgctacaactggactgcgacggac
aactcgctggcggatacagacggcaataccggtaacaatcagcttgtattcaatcctgcc
ggtctcgccagcggtcgctacaaagttcagctgaccgtcgcggattccagcaacgccacc
gatgaagccaggctgtacttccgaatagtggccgcgctgccgacgcttgatccgactgta
gattcggacggcgatggcgtaaacgatgcagaggagggcgtcgctgatggcgatgacgac
ggtattccagactatctggataatatcgtcgccaccaacgtgctgccggaagtggcgtcg
gaaaccagctcctatctggtggaatgcgaccctggcgtccgttgccgcctggggcaattc
gccatcctgggcgccaatggcggcgcgcgcctggagccggaggagttgcagacgttgccc
gatatccgtacggacgacctgtttgagcccctgggaggcgtgttcgattttgaggtacat
gagctgcctacgttgggccaaagcgtccgcgtggtgctgccgcaagaccagccattgccg
gccaacggcgtctaccggaagttccagaacaatagctggacgacatttgtggtcgacgcc
aacaatgcgctgcactccgcgccgggcaaccctggctactgtccgccgccgggagatgac
agttgggagactggcctgatcagcggttattactgtctgcaattgactattgaagatggc
ggccccaacgatgctgacggactggtcaacgcggcggtggaagaccctggcgtggtggcg
gtggataaacgcacgccttccgatattgaaagcgagggcggaggttccggcggcggcgct
atcaacgggacgctattgttagcgctgctgggactgagcatcctgtcccggcgctacctg
caattacgcacgtcagtcctggcggtgtttttgatggtcagcctgggtgcgcctgatgtc
tcccatgcggcggactgggaggctatgaagacgcgcttgcaggaccgcggatatctggag
ttcggcgcttatcacgtcagcggctcccaggaagcaggggagttcaagcgcggtttggaa
aatgaagacgtcacggtaggcgtcaacaactatgacgtctcccgctacggctaccagttt
ctcgccggctatcgctatcaccagcatatggcggcggaaatcggtttcctcgacctgggg
aacgtcaaagtcaacatgagcgccagcgcactgaccccggaaacactggaagacgccgtg
gaaaaacactaccccgtcagcggctccggctggaccctctccaaccgcttcctatggcct
gtgcgtgaaaaaatcaccctgtcggcggaagtcggactattcctctgggaaggcgacatc
caactcagcggcgccgacatcaatccagacctcaaaggcgacgccgacccactactgggc
ctgggcctcaactaccgcctccacaaaaacatcgacgcctccgtacgcctgaaacgcgcg
ttcttcgaaggccaacatgcggatttgatgggtgtgggagtgatttggcggtttaagggg
gattga
DBGET
integrated database retrieval system
