Hahella chejuensis: HCH_04705
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Entry
HCH_04705 CDS
T00307
Name
(GenBank) Superfamily II DNA and RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
hch
Hahella chejuensis
Pathway
hch03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hch00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HCH_04705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hch03019
]
HCH_04705
Enzymes [BR:
hch01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HCH_04705
Messenger RNA biogenesis [BR:
hch03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HCH_04705
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
MucB_RseB
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ABC31403
UniProt:
Q2SD71
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All DBs
Position
4836360..4837721
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AA seq
453 aa
AA seq
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MSFASLGLSAPILDAISEQGYASPSPIQLQAIPVVLEGKDVMAAAQTGTGKTAAFTLPIL
ERLSKGDRARSNQARALILTPTRELAAQVGECVSIYSSKLPLRSTVVFGGVKINPQMMRL
RRGVDVIVATPGRLLDLYNQNAVRFQDLEVLVLDEADRMLDMGFIHDIRKILDILPKRRQ
NLMFSATFSNDIRKLAKELVNNPVEISVSPPNTTAKTVKQWIHPVDKKQKSALLTQLIRD
NNWDQALVFSRTKHGANRLTRQLCAKGINAAAIHGDKSQNARTKALADFKTGSVQILVAT
DIAARGIDIDQLPQVVNFDLPQVAEDYVHRIGRTGRAGAEGQAVSLVSADEFKLLADIER
LIQKRLPREEIEGFEPEQRLPESRLPTQPVKARKPKKPKAAKSGEQREQDRKGEKKGPRQ
DGAARNNANAPRRQRRRGTGAGRPAPRKEAKSN
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgagctttgcctccctcggcttgtccgcccccattctcgacgctatttctgaacagggc
tatgcatcgccctcacctatccagttgcaagcaattcctgtcgttctggaaggaaaagac
gtcatggcggccgcgcagacgggaaccggcaaaaccgccgccttcacgctgcctattttg
gagcgcttatcgaaaggcgaccgggcgcgctcaaatcaggctcgcgccttgatcctcaca
ccaacgcgggagctcgccgctcaagtcggcgaatgtgtatccatctacagtagcaagttg
cccctacgctccaccgtggtttttggcggagtaaaaatcaacccgcagatgatgcgttta
cgccgcggcgtagacgtgatagtagcaacgcccggacgcctgctcgacctttacaatcaa
aacgccgtgcgctttcaggatctggaagtgctggtattggatgaagccgaccgcatgctg
gatatgggctttatccatgatattcgcaagattctggacattttgccgaagcgccggcaa
aacctgatgttctccgccactttctccaacgatattcgcaagctggcgaaagaactggtt
aacaatccagtagaaatctccgttagccctcccaatacaacggccaaaacggttaagcag
tggattcatccggttgataaaaagcagaaatccgccctgctgacgcaactcattcgcgac
aacaactgggatcaagccctggtgttcagccgcaccaaacacggagccaaccgcctgacg
cggcaactctgcgccaaaggcatcaatgccgccgctatccatggcgacaaaagccagaac
gccagaaccaaggcgctggcggatttcaaaacgggaagcgtacagattctggtagcgacg
gacatcgctgcgcgcggcatcgacattgatcagctgccccaggtcgtgaactttgatttg
ccccaagtggcggaagattatgtacaccgtatcggccgcaccggccgcgccggcgcggaa
ggacaagcggtatccctggtgagcgcggatgagttcaagttactcgccgatatcgagagg
ctgattcaaaagcgcctgcctcgtgaagaaatcgaaggattcgaacctgaacagcgtcta
cctgaatcgcgcctgcccactcaacccgtgaaagcgcgcaagccgaaaaagcctaaagca
gccaagagcggcgagcagcgtgaacaagacagaaagggcgagaaaaaaggcccgcggcaa
gacggcgcggcgagaaacaatgcaaacgcgccccgcagacaacgcagaagaggcactggc
gccgggcgacctgcgccacgcaaagaggccaagagcaactag
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