Hahella chejuensis: HCH_04752
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Entry
HCH_04752 CDS
T00307
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
hch
Hahella chejuensis
Brite
KEGG Orthology (KO) [BR:
hch00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hch03032
]
HCH_04752 (topA)
03400 DNA repair and recombination proteins [BR:
hch03400
]
HCH_04752 (topA)
Enzymes [BR:
hch01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HCH_04752 (topA)
DNA replication proteins [BR:
hch03032
]
Prokaryotic type
DNA Topoisomerases
HCH_04752 (topA)
DNA repair and recombination proteins [BR:
hch03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HCH_04752 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Toprim_4
Zn_ribbon_recom
YdjO
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
ABC31449
UniProt:
Q2SD25
LinkDB
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Position
complement(4888600..4891254)
Genome browser
AA seq
884 aa
AA seq
DB search
MTAISTRSKEPSAMGKSLVIVESPAKAKTINKYLGSEYVVKSSVGHIRDLPTSGGKETSS
PKERAAEAAKMRKLPAEERESIKKRKARDQLISRMGVDPENDWAARYEVLPGKEKVVEEL
RRLAKSADQIYLATDLDREGEAIAWHLKESIGGDDSRYRRVVFNEITKSAITEAFKSPGQ
LDYNRVNAQQARRFLDRVVGYMVSPLLWSKIARGLSAGRVQSVAVRLIVEREREIRAFTP
EEYWELHALLSKSKQQAKFQVAKYKGENYRPTNKAQSDKLTALLQTQAFKVVNREDKPSV
TKAPAPFITSTLQQAASTRLGFSVKKTMVLAQRLYEAGYITYMRTDSTNLSADAVNACRE
FIGKKFGDKYLPDNPKTYVSKERAQEAHEAIRPSDINVGANQISGLEKDAEKLYDLIWRQ
FVACQMENARFLSTSIQVQAGDFELRTRGRLLQFDGFLKVLPAQAKKDDEAELPAFEVND
QLDLDKLEPTQHFTKPAPRYTEATLVKELEKRSIGRPSTYASIISTIQERGYVKLANRRF
YAEKMGDIVTDRLTEAFTDLMDYGFTAKMEGQLDEIASGNEGWKQVLNAFYSDFAKKLEK
ADMEGGMRANQAVQTEIACPTCSRPMQIRTASTGVFLGCSGYALPPKERCKTTINLIPGD
EVIRADDEEGEANALRAKKRCPICDTAMDSYVIDETRKLHVCGNNPDCEGYEVEGGQFKV
AGYDGPTLECDKCGAEMQLKTGRFGKYFGCTSSTCGNTRKLLKNGEPAPPKMEPVVMPEL
ACDKVDDIFVLRDGASGLFLAASKFPKNRETRAPLVEELIPHKKEIDPKHHYLLEAPTRD
PEGNPAIIRFSRKTKQQYVMSEKGGKPTGWSAFYKDGKWVAKDK
NT seq
2655 nt
NT seq
+upstream
nt +downstream
nt
atgacggctatttcaactaggagcaaagaaccatccgctatgggtaaatcgctggtaatc
gtggagtcccctgcaaaggcaaaaaccataaacaaatatcttggttcggaatatgtagtt
aaatccagtgtggggcatattcgtgatttgccgaccagtggaggtaaggaaacatcatct
ccgaaagagcgtgcggcggaagcggcgaaaatgcgtaagctgcctgctgaagaacgcgaa
agcatcaagaaacgtaaagccagggatcaattgatctctcgtatgggcgttgatccagaa
aatgactgggcggcccgctatgaagtccttccaggtaaagaaaaggtcgttgaagagctg
aggcgtctggcgaaaagcgctgaccagatctatctcgcaacggacttggaccgggaagga
gaggctatcgcctggcatcttaaagaatctattggcggcgatgactcccgttatcgtcgc
gtggtctttaacgagatcacaaaatccgccattaccgaggcgttcaaaagtcccggccag
cttgactacaaccgcgtaaacgcccagcaggcgcgccgctttctcgatcgtgtggtcggc
tacatggtgtcgcccttgttgtggtccaagatagcgcgtggtttgtctgcggggcgggtg
caatcggttgcagtgcgcctgattgttgagcgtgagcgagaaattcgcgcctttacgccg
gaagagtactgggaattgcatgcgttgctctccaagagcaagcagcaggctaaattccag
gtcgccaagtacaaaggtgagaattatcggcccaccaacaaagcgcagtctgacaaactg
actgccttgttgcagactcaggcgttcaaggttgttaatcgcgaggataaaccctcagtc
accaaggcgccggcgccgtttatcacttccaccttgcagcaggcggcgagcacccgttta
gggtttagcgtcaagaagaccatggtgttggcgcagcgtctttatgaggcgggttacatc
acctatatgagaacggactccaccaacttgtctgcagacgcggtgaacgcctgtcgtgaa
tttatcggcaagaagtttggcgataaatatctgcctgacaacccgaaaacatacgtgagt
aaagagcgggcgcaggaagcgcacgaggcgatacgtccttctgatatcaacgtgggcgct
aatcagatttccggtctcgaaaaggacgccgagaagttgtatgacctcatttggcgtcaa
ttcgtggcctgtcagatggaaaatgcgcgtttcctgagcaccagtattcaggtgcaggcg
ggagactttgagctaagaacccgtggtcgacttctgcagttcgacggcttccttaaagtg
ctgcctgcgcaagcgaagaaggacgacgaagcggagttgccggcgttcgaagtcaacgat
cagttggatctggataagctggagccaactcagcacttcaccaaacccgcgccgcgttat
acagaggcgacgctggttaaagagctggagaagcggagtatcgggcgtccttccacttat
gcgtcaatcatctccaccattcaggagcgcggttatgtgaagctggccaaccggcgtttc
tatgcggagaagatgggcgatatcgttacggaccgcttgacggaagcatttacggacctg
atggattacggctttacggcgaagatggaaggtcagctggatgagatcgcttctggcaac
gagggttggaagcaggttctcaacgcgttctattctgatttcgccaagaagctggaaaag
gcggacatggaaggcggcatgcgcgctaatcaggcggtgcagacggaaattgcatgtccg
acctgttcacgcccaatgcagatacgcactgcttccaccggcgtgttccttggttgttcc
ggttatgcgctgccgccgaaagaacgttgcaagacgacgatcaacctgattcctggcgac
gaagtgattcgtgcggacgatgaagaaggcgaagcgaacgcgctgcgagcgaagaagcgt
tgcccgatctgcgataccgccatggatagctatgtcattgatgaaacccgcaagctgcac
gtgtgcggtaataatccagactgtgaaggttatgaagtcgaaggcggtcagttcaaagtg
gctggctatgatgggccgacacttgagtgtgacaagtgcggggctgagatgcagctcaaa
accggccgttttgggaagtactttggctgcaccagctcgacctgcggcaatacccgcaag
ctgttgaagaatggtgagcctgcgccgcccaagatggagcctgtggttatgccggagctg
gcgtgcgacaaggttgacgacatctttgtgctgcgcgatggcgcttcagggttgttcctg
gcggcgagtaagtttcccaagaatcgtgaaacgcgcgcgccgctggtggaggagttaatt
cctcacaagaaggaaattgatcctaagcaccactacctgctggaggcgcctacccgtgac
ccggaaggaaatccggcgattatccgcttcagtcgcaagaccaaacagcagtatgtcatg
tcggagaagggggggaagcccaccggctggtcggctttctataaagatggaaagtgggtg
gctaaagacaaatag
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