Hahella chejuensis: HCH_06274
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Entry
HCH_06274 CDS
T00307
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma-70 factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
hch
Hahella chejuensis
Pathway
hch02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hch00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HCH_06274 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hch03021
]
HCH_06274 (rpoD)
Transcription machinery [BR:
hch03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HCH_06274 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
CDC45
Motif
Other DBs
NCBI-ProteinID:
ABC32921
UniProt:
Q2S8V3
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All DBs
Position
6411603..6413522
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AA seq
639 aa
AA seq
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MSGNSRKSRLKELIARGKEQGYLTYAEVNDHLPEDIADPDQVEDIIRMINDMGIMVCEEA
PDADTLLITDGDSTDESVAAEAAAALASVENDVGRTTDPVRMYMREMGTVELLTREGEIQ
IAKRIEEGLRDVMATLVYYPGTVSNILAAFDATQGEDGGRVSDVITGFLDPVEDGVIPEA
NDEIESDDVDEDEDEDEEAEESSGKDDAKAKKDLDEDEDEESEGDDNSDSDDDNDSGPDP
EIARGRFAELREAFNTLNAAIDKHGRASREAQECFDEVSRIFAPFKLAQKQFDEIINTIR
VTNDSVRKYEREILNICTRDCKMPRKNFIKMFPGNETNLEWVKGLGARSEEWAKTAQTKE
EEITRLQRRIVSIQNEVDLPVADIKEIHRRISIGEAKARRAKKEMVEANLRLVISIAKKY
TNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPV
HMIETINKLNRISRHMLQEMGREATPEELAKKMDMPEDKVRKVLKIAKEPISMETPIGDD
EDSHLGDFIEDSHAESPIDSATTEGLKESTRRVLAGLTAREAKVLRMRFGIEMNTDHTLE
EVGKQFDVTRERIRQIEAKALRKLRHPSRSDHLRSFIDD
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggcaattcccgaaaatctcgattgaaagaactcatcgcccgcggcaaagaacaa
ggttacctaacatacgcagaagttaacgaccatctgccagaggatatagcagatccggat
caggtggaagacattatacgcatgattaacgacatgggtatcatggtctgcgaagaagct
ccagatgcggataccttgttgatcaccgatggtgattccactgatgagtctgtagcagcg
gaagctgccgcggcgcttgcctccgtcgaaaacgatgtaggtcgcacgactgacccggtg
cgtatgtacatgcgtgagatgggtacggttgagctgctgactcgtgagggtgagatccag
atcgccaagcgcatcgaagaaggtttgcgcgatgtgatggccacgctggtttactatcct
ggcacggtttccaacattcttgccgcttttgacgccacacagggcgaagatggcggtcgc
gtctccgacgtcattacagggttccttgaccccgttgaagatggcgtcattcctgaagct
aacgatgaaatagagtccgacgacgtcgacgaagacgaggatgaggacgaagaagcagaa
gaaagctcaggcaaggacgacgctaaagcaaaaaaagacctcgacgaggacgaggacgaa
gaaagcgagggcgacgacaacagcgatagcgacgacgacaacgacagtggccccgaccct
gaaattgcacgcggccgctttgctgaattgcgcgaagccttcaacacgctgaacgccgcc
atcgacaagcatggtcgcgccagccgtgaagcacaggaatgctttgacgaggtcagtcgt
atttttgctcccttcaagctggcgcaaaagcagttcgacgaaattatcaatacgatccgc
gttactaacgacagtgtccgtaagtacgagcgcgaaatcctgaatatctgtacccgcgac
tgcaaaatgccgcgcaagaacttcatcaagatgttccccggcaatgagaccaaccttgaa
tgggtcaagggtctgggcgccaggagtgaggaatgggccaaaacggctcaaactaaagaa
gaggaaatcactcgcctgcaacgtcgcattgtcagcattcagaatgaagttgatctgcct
gttgcggacatcaaagaaatccaccgtcgcatttccattggcgaagcgaaagcacgtcgc
gccaagaaggaaatggtggaagccaacttgcgtctggttatctccatcgctaaaaagtac
accaaccgtggtctgcagttcctggacctgattcaggaaggcaatattggtttgatgaaa
gcggtagacaagtttgaataccgccgcggatacaagttctccacgtatgctacttggtgg
attcgtcaggcgatcacgcgttctatcgctgatcaggcccgcactatccgtattccagtg
catatgattgagaccatcaataagctgaaccgcatttcccgtcacatgctgcaggaaatg
ggccgtgaagcgacgccggaagaactggcgaagaagatggacatgccggaagacaaagta
cgtaaggtcctgaaaatcgccaaagagcccatctcaatggagacgccaatcggtgacgac
gaagattcgcatttgggcgatttcatcgaagattctcacgcagaatctccgattgattca
gcgacaactgaaggcctgaaagaatctactcgccgcgtattggcaggtttgaccgcaaga
gaagccaaagtactgcgtatgcgtttcggtatcgagatgaatacggaccacactctggaa
gaagtcggcaagcagttcgacgtcacccgtgagcgtatccgtcaaatcgaagccaaagcc
ctgcgcaaactgagacaccccagccgctcagatcacctgcgcagcttcatcgacgattaa
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