Hahella chejuensis: HCH_06838
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Entry
HCH_06838 CDS
T00307
Name
(GenBank) Exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
hch
Hahella chejuensis
Pathway
hch03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hch00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HCH_06838
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hch03019
]
HCH_06838
03016 Transfer RNA biogenesis [BR:
hch03016
]
HCH_06838
Enzymes [BR:
hch01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HCH_06838
Messenger RNA biogenesis [BR:
hch03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HCH_06838
Transfer RNA biogenesis [BR:
hch03016
]
Prokaryotic type
tRNA degradation factors
HCH_06838
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
Motif
Other DBs
NCBI-ProteinID:
ABC33459
UniProt:
Q2S7B5
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All DBs
Position
6949546..6951519
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AA seq
657 aa
AA seq
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MLNSDALTQLKQFKQDLRIANNRFEGTVKGSPGRFGFAVLDDGRECFLNPDEMQKVFPGD
RILVEVSQDDKGRDVAKVVQHMRSELKYFVGRYFTRGQGHFVEPDLMGMNRWIFIPPKKR
QQAHVNDLVLCRVLQHPFPEGKPQAEVVKIIGKPGASGLEVNYMLAKYNLQAHNRASINE
AELQKQVAAELEKRKDLRETPFVTIDAASTQDMDDALFATARPEGGWELLAAIADPSTLI
PEGGDIDKYAQRLGSSFYFADRTLPMLPAKLANHFCSLKSGEDRLALVCTMQIDADGAIS
SYSIEEAAIRCAANLTYEEVATALASGDASAHAYDATLQALNEVKAALASHRRAHALVNE
DRPDYQLELDENGKVKNIHRKINSVAHSIVEEAMVAANRCAADFLKQNTERSLYTSHSGF
RPERLDQIKQIVSEQISDYDCSDLHTWEGFKKFMDFLDANPPEVPVKAIANRLLARGALS
DQPCPHFGMGLPHYTTFTSPIRKYVDLSIHRQIKSVLKNQKPHTLNAKAILQLQESLRAG
RSAVNESETWLKCEYAQTLIGKTFDGVVQHTTGSGFQARLDENGIEGMVNLGALQEKFRF
DGTYFQHTGEHRQFRLEQPVKVTISAVDMEKKLIQMELAEPAPVAQPAAAEEPQTQE
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgttaaattccgatgccttaacccaattgaaacagttcaaacaagacctgcgtatcgcc
aataaccgttttgaaggaacggtgaaaggcagtccggggcgttttggatttgctgtgttg
gatgacggcagagagtgcttcctgaacccggacgaaatgcagaaagtatttccgggcgac
cgaattctggtggaagtcagccaggacgacaaaggccgcgatgtcgccaaagtcgtgcaa
cacatgagaagtgaactaaagtatttcgtcggccgttatttcactcgcggccaagggcat
ttcgttgagcccgacctgatgggcatgaaccgctggattttcattccgccgaagaagcgc
cagcaagcacacgtcaacgacctggttctgtgccgcgtattgcagcatcccttccctgaa
ggcaagccgcaggccgaagtggtgaaaatcatcggcaagcccggcgcatccggtctggaa
gtgaactacatgctggccaagtacaatctgcaggcgcataaccgcgcctccatcaacgaa
gcggaactgcagaagcaggtcgccgcggagctggaaaagcgcaaagacctgcgggaaacg
cctttcgtcacgatcgacgccgccagcactcaggatatggacgacgctctgttcgccacc
gccaggcctgaaggaggctgggaattgctggccgccatcgccgacccgtccacactgata
cctgaaggcggcgatatcgacaaatacgcgcaacgcctgggcagctctttctacttcgcc
gaccgcacattgcctatgttgccggccaaactggccaaccacttctgttcactgaagtcc
ggcgaagatcgtctggccctggtttgcacaatgcagatcgacgcagatggcgctatttcc
tcttacagcattgaagaagccgccattcgctgcgccgccaacctgacttacgaagaagtc
gcaaccgctttagcctctggcgacgccagcgcccatgcctacgacgcgactttgcaggcc
ttgaatgaagtcaaagcggccctggccagccatcgccgcgcacacgcactggtgaatgaa
gaccgcccggactatcagttagaactggatgagaacggcaaggtcaaaaacatccatcgc
aagatcaacagcgtcgctcactccatcgtggaggaagcgatggtggccgccaaccgttgc
gcggcggatttcctgaagcaaaacaccgagcgctctctgtatacgtcccacagtggattc
cgtcctgagcgtctggatcagatcaagcaaatcgtctccgagcaaatatccgattacgat
tgcagcgacctgcatacgtgggaaggcttcaagaaattcatggacttcctggacgccaat
ccgccggaagtgcctgtgaaggcgatcgccaaccgcctgctggcgcgtggcgcgttgtct
gaccagccctgccctcatttcggcatggggctgcctcactacaccaccttcacgtctccg
attcgtaagtatgtggacttgagcattcaccgtcagatcaaaagcgtactgaaaaaccag
aaaccgcatacattgaacgccaaagccattctacagctgcaggaatcattgcgcgccggc
cgtagcgccgtgaacgagtccgagacctggctgaagtgcgaatatgcccaaaccctgatc
ggcaagaccttcgatggcgtggtgcagcacaccactggctccggattccaggcgcgtctg
gacgagaatggcattgaaggcatggtgaatttgggcgcattacaggagaagttccgcttc
gacggcacttacttccagcacactggcgaacatcgccaattccgcctggagcaaccagtg
aaagtgaccatcagcgcggtcgatatggagaaaaaactgattcagatggagctggcggag
cccgccccggtagcgcagcctgctgcggcggaagaaccgcaaacccaggaataa
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