Candidatus Hodgkinia cicadicola Dsem: HCDSEM_017
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Entry
HCDSEM_017 CDS
T00938
Symbol
rpoD
Name
(GenBank) putative RNA polymerase sigma factor
KO
K03086
RNA polymerase primary sigma factor
Organism
hci
Candidatus Hodgkinia cicadicola Dsem
Brite
KEGG Orthology (KO) [BR:
hci00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HCDSEM_017 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hci03021
]
HCDSEM_017 (rpoD)
Transcription machinery [BR:
hci03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HCDSEM_017 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Motif
Other DBs
NCBI-ProteinID:
ACT34206
LinkDB
All DBs
Position
15593..16714
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AA seq
373 aa
AA seq
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MHVAACACFVKLPPVAVLARLVASEVWAGSLGGAEVANKRAGFGGSASSGCVASTGAYKL
EKLFGASCGLASLRGVCAQFKSCACRHCGLWRALLKSLCCKPGLATRWVAVSALLKLGLD
QKLTQLARALIVVSKFDLGLLGIRCIRKARALMWLATAANVANNLKAAKRSLVGSSASVI
ADVIKAYPSCDAQDPALASAGRDGLMASANRFDLVSGYRFAAYSKWWVKHNVIAHVLAGA
KGWAAASAKQLAGAAKLKRLSLDYCGGGASLHEAVEGGSALAGGVLKPAARGAQPRFEAR
CDDYTLISSLMLLAPREERVVRLRGRARAPFSWSLRRIGLDVGLTRERVRQLALSASTKL
ASAALSCSLASGI
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
ttgcacgttgcagcgtgcgcgtgctttgttaagctgcctccggtggctgtgctagcgagg
cttgtagccagcgaggtttgagctggaagcctcgggggggctgaggtggctaacaaacgc
gctggctttggtggtagcgcgagcagcgggtgcgtggcgtccactggcgcgtacaagctt
gaaaagctgtttggcgcaagctgcggcttagcaagcttgcgcggtgtgtgcgctcagttt
aaaagctgcgcttgcaggcactgcgggctgtggcgcgcgcttctcaagtctctgtgctgc
aagcctgggcttgcgacgcgctgagtcgcagttagcgcgctgctaaagcttgggctagat
cagaagcttacacagctagcgcgcgcgctgattgtggtgtctaagtttgatttaggtctt
ttgggcatcaggtgcattagaaaggcgcgcgcccttatgtggcttgcgacggctgctaac
gtggctaacaatcttaaagccgctaagcgctcgctggttggctccagcgctagcgtgata
gctgacgtcattaaagcgtatccgagctgcgatgcacaagatccagcgctggctagcgct
ggccgcgacggattgatggcgtcggctaacaggtttgacctggttagcggctacaggttt
gcggcgtactccaagtggtgagtcaagcacaacgtgatagcgcacgtgctagcaggtgct
aaaggctgagccgcagctagcgctaagcagctggccggcgccgccaagctgaaacggctg
tcgctggactattgtggagggggcgccagcttacacgaggcggttgaaggtgggagcgcg
ctggcaggcggtgtgctaaagcctgcggcgcgcggcgcacaacctcgctttgaagctcgt
tgcgacgactacacactaatctccagcttgatgctgctagcgcctagggaggagcgcgtc
gttaggcttagagggcgcgctcgcgcgccctttagctgatcgctaagacgaatagggctg
gacgttgggctaacgagagagcgagtaaggcagctggcgctgagcgctagcaccaagctg
gcgtcggctgcgctaagctgctcactcgcttccggaatttag
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