Candidatus Hodgkinia cicadicola Dsem: HCDSEM_018
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Entry
HCDSEM_018 CDS
T00938
Symbol
dnaQ
Name
(GenBank) putative DNA polymerase III, epsilon subunit
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
hci
Candidatus Hodgkinia cicadicola Dsem
Pathway
hci03030
DNA replication
Brite
KEGG Orthology (KO) [BR:
hci00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HCDSEM_018 (dnaQ)
03430 Mismatch repair
HCDSEM_018 (dnaQ)
03440 Homologous recombination
HCDSEM_018 (dnaQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hci03032
]
HCDSEM_018 (dnaQ)
03400 DNA repair and recombination proteins [BR:
hci03400
]
HCDSEM_018 (dnaQ)
Enzymes [BR:
hci01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HCDSEM_018 (dnaQ)
DNA replication proteins [BR:
hci03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HCDSEM_018 (dnaQ)
DNA repair and recombination proteins [BR:
hci03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HCDSEM_018 (dnaQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
DNA_pol_A_exo1
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
ACT34207
LinkDB
All DBs
Position
complement(16711..17259)
Genome browser
AA seq
182 aa
AA seq
DB search
MSCFKIREIILDTETTGLSVKTDRLIELAAIKLEDGRRTPHTYHSYFNPQPVKVSRSAFN
VHGISNEFLSDKPAFKSCAREFLEFVAGHELIAHNARFDLQIINRELQMAGADPIDAGCW
RDSLSIAKQLFPNRSNSMAALCKRFNLECETETHSAARDCELLARVYELILDEKRRRIAA
LD
NT seq
549 nt
NT seq
+upstream
nt +downstream
nt
gtgagctgctttaaaatcagagaaataatactagacaccgaaaccacgggcttgagtgtt
aaaaccgacaggctgatagagctggcagcaataaagctcgaagatggcaggcgcacgcca
cacacgtaccacagctacttcaatccgcagcctgtaaaagtcagtaggagcgcgttcaac
gtgcacggaatctcaaacgagtttctaagtgacaagccagcgtttaaaagctgcgctcgc
gagtttctcgagtttgtagccggccacgagctgatagcacacaacgcgaggtttgacctt
cagataataaatcgcgagcttcaaatggctggcgcagaccctattgacgccggctgctgg
cgcgactcgctttcgatcgctaaacagctgttcccgaacaggtcaaactcgatggcagcg
ctgtgcaaacgctttaatcttgaatgcgaaaccgaaactcacagcgcggcgcgagactgc
gagctgctagcgcgcgtctacgagctaattctagacgaaaagcgacgacgcatagcagcg
ctagactaa
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