Candidatus Hodgkinia cicadicola Dsem: HCDSEM_066
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Entry
HCDSEM_066 CDS
T00938
Symbol
rpoB
Name
(GenBank) putative DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
hci
Candidatus Hodgkinia cicadicola Dsem
Pathway
hci03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hci00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HCDSEM_066 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hci03021
]
HCDSEM_066 (rpoB)
03400 DNA repair and recombination proteins [BR:
hci03400
]
HCDSEM_066 (rpoB)
Enzymes [BR:
hci01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HCDSEM_066 (rpoB)
Transcription machinery [BR:
hci03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HCDSEM_066 (rpoB)
DNA repair and recombination proteins [BR:
hci03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HCDSEM_066 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
Motif
Other DBs
NCBI-ProteinID:
ACT34252
LinkDB
All DBs
Position
47919..51722
Genome browser
AA seq
1267 aa
AA seq
DB search
MRLSVSGELAAAHALKACSPQTSLYFDALVGGGDGASKLVLELLTLFPVCLGCEALELWR
VDLDSCDRASADDDEADNEFECGWQVSMKLGWLRFDCASGVTAVASRADADAVLMKLPKL
TKAGTLNANGVEKVLVSRLRLHAGAKLAFEDGEAQVGFPALSRASALALRCRRGRVDAEH
NGQRVSCPLALLALGAKREHVLKLGAGAKTVVYYRGRWWALGWRDLSCDDRPAYGVRRKT
RAARALEAFEPLGSEVCAHDVVAGALGIVLKSGQYMDWSLRGVARVTVVDSAAKPLVAAL
ASFGSPSRWRAAAASLASARLNSADKPVLAAASGCNLEASDFVSKAVVVGVWRKLSLSSL
LVKRLSEVKVVVGAGDDVLAAVRSVLLHALSANALVFTVGALLAGDASAFQRKLQPVVSK
LFRSSSACQYADQVNSLSELSHRLRLTCMGGGGVNARSADTRSRDVRKWHFGKVCPIESP
EGQSIGLVLQLAMYARVEASGHIATMFAKSRRGLISNQMLALNCFSQQAFSIAIFGASPA
SARVMSFKACKPAMCAISAVDLWPATNAQLFSPAVNLIPFLEHNDATRALMASNMLKQAL
PLAEPQAPLVGTGEERAVMLAAGHNLLADQHCVVVRADAAQVVVYCPCADAYKAYLVPEP
TRSNQGVCRRLRVVVEPNQVLKAGDVVAECQSSDNGEMSLGANLLVAFMCWNGFNYEDSI
LLSEAVIARGLLDSLHVLKLKAKVLRTAFGDELVTNELPMVAEKHKAHLSEQGVVSVGDT
VCEHDVLVGKLSPVDYADSLDVATADAVATAGADDGGDDGDSGGDDGLSVTLVNDMGENI
RYVKSTSLRVPTGVECASVIDVSFASCEAEASLGESALDACVKELDLIQRRYARRLGKVA
KWAAVGFDGANACSKPDHGLVLEAKSSNAQAQQAISLLRQLYACEVDALFARASAAASAR
ISCDGPNSASVLDEITVTLLVRKSIKAGDKVSGRHGNKGVISRVAPAEDMPHLADGTPID
IVLNPLSVPSRMNIGQILEARLGLVGLALGAEFERVVDACQVADASSERELEGAKSKISS
LFPSLDLRRASASRVLALARKLSRGVGLECPPFCHLSEACIKALCRRAGALDASGRLQLF
DGVTGLPFDQQTAVGSIYVLKLNHLVDDKMYARATGPYSMVTQQPLKGKANKGGQRLGEM
EVWALQSYGVSYMLKEALTAKCDDVAARHVMASSIAGCAPRVESSWGESLLLLVREMCSL
CVDFRFE
NT seq
3804 nt
NT seq
+upstream
nt +downstream
nt
ttgaggctaagcgttagcggcgagctggcggcggctcacgcgctcaaagcttgcagcccg
caaaccagcctctacttcgacgcgttggttggtggtggcgatggcgcgtcaaaacttgtt
ttggagctgctaacgctgtttcctgtctgcttggggtgtgaagctttggagctgtggcgt
gtcgatcttgacagctgcgaccgtgctagcgctgacgatgacgaagctgacaacgagttt
gaatgcggctggcaagtttcaatgaagctgggatgacttcgttttgattgtgcgtcgggt
gtgacggctgtagccagcagagctgacgctgacgctgttctgatgaagttgccgaagctt
accaaagctggcacgctaaatgctaacggcgttgaaaaggtgttggttagccggcttagg
cttcacgccggcgctaagcttgcgtttgaagacggcgaagcgcaagtcggctttcccgct
ttgagccgcgcttctgctctagcgctacgctgcagacgtggtcgggttgacgccgaacac
aacggtcagcgtgtaagctgcccgcttgcactgctggcgctgggcgcgaaacgtgaacac
gttttaaagcttggggctggcgctaaaactgtggtgtattacagaggcaggtggtgggcg
cttggctgacgagacctaagctgcgacgacaggccagcttacggtgtgcgcaggaaaacc
agggctgcgcgcgcgctagaagcgttcgagcccctcggaagcgaggtgtgcgcgcacgac
gtggtggctggcgcgctgggcattgtgctaaaatctggtcaatacatggactgaagcttg
cggggcgtggcacgcgtcacagtcgtggactcggcggctaagcctttggtggctgcgctg
gcttcatttggctcgccatcgaggtggcgcgctgccgctgctagcttggcgtcagcgcgc
ttgaacagcgctgacaagcctgtgctcgcagccgccagcggctgtaatctggaagctagc
gacttcgtgtccaaagccgtcgtggtgggcgtgtgacgcaagctaagcttaagctcgctg
cttgtgaagaggctttctgaggtcaaagtggttgtgggcgctggcgacgacgtgctggcc
gcggtgcgttctgtgttgctacacgcgctaagcgctaacgcgcttgtttttacggtgggc
gcgctgctagccggcgatgcctcagcttttcagcgcaagcttcagcccgtggttagcaag
ctttttcgctcgtcaagcgcgtgccagtacgctgatcaagttaacagcttgtccgagctg
tctcacagactcaggttgacttgtatgggtggaggtggcgttaacgcgcgctcagctgac
acgcgctcccgcgacgtgcgcaagtggcactttggcaaggtgtgtccgatagagtcgcct
gagggccagtccatcgggctggtgctgcagcttgcaatgtacgctcgcgtcgaagctagc
ggccacatagcaaccatgtttgctaaatcaaggcgtgggctgattagcaaccaaatgcta
gcgcttaactgcttcagccagcaggcgttttcgattgctatcttcggcgctagcccagct
agcgcgcgtgttatgagctttaaggcgtgcaaacccgcaatgtgcgctattagcgctgtg
gacctgtgacctgccactaacgcgcagctgttttcaccagcagttaatctaattccgttt
ttggaacacaacgacgccacgcgcgcgctgatggcgtctaacatgcttaagcaagcgctg
ccgctggctgagccccaagctccgctggttggtaccggcgaagagcgcgccgtcatgctg
gccgcaggccacaacttgcttgctgatcagcattgcgtggttgttcgcgctgacgccgcc
caagttgtggtttactgtccttgcgctgacgcctacaaggcgtacttggtgcctgagccc
accaggtcaaatcaaggtgtttgtcgcaggctgcgcgttgtcgttgagcctaatcaggtt
ttaaaagctggcgacgtcgtggccgagtgtcagtctagcgacaacggcgagatgagctta
ggcgccaacttgcttgtggcgtttatgtgctgaaacggctttaactacgaagattcgatc
ttgctatctgaagccgtaattgctagggggctgctggactcgcttcatgtgctcaagctg
aaagccaaggtgcttagaactgcgtttggtgacgagctagttactaacgagctgcccatg
gtggctgaaaaacacaaagcccacttgagcgagcagggggttgttagcgttggcgacacg
gtgtgcgagcacgacgtgctggttggcaagctgtctcctgttgactatgccgatagctta
gacgttgcgacagctgacgccgttgcgacagctggcgctgacgacggcggcgacgacggc
gacagcggcggcgacgacggcttgtctgttacgcttgttaatgacatgggcgaaaacatt
cgctatgtaaagagcacgtcgctaagagtgcccactggcgtggagtgcgcgtccgtgatc
gatgtgtcgtttgccagctgtgaagctgaagctagcttgggcgagagcgcgctggacgcg
tgcgttaaagaacttgatctgattcagcggcgctacgcgcgcagacttggcaaggtggcc
aaatgagctgctgtaggctttgacggcgctaacgcgtgctcgaagcctgatcacgggcta
gtgcttgaagccaaatctagcaacgcgcaagcccagcaagcgatatcgctgctgcgacag
ctgtacgcttgcgaagttgacgctttgtttgcgcgcgctagcgctgcagccagcgcgcgc
atttcgtgtgacggcccaaatagcgctagcgttttggacgaaataaccgtaacgctgctc
gttagaaaatctataaaagctggtgacaaagtgagtggaaggcacggcaacaaaggcgtg
atttcgcgggttgcgccagcagaagacatgcctcatttggccgatggcacgcccatagac
atcgtgctaaatccgttaagtgtgccatcaagaatgaatataggtcagattttagaggcg
cgccttgggctagtcggtttggcgctaggcgctgagtttgaacgagttgttgatgcgtgt
caggttgctgacgctagcagcgagcgcgagcttgaaggcgcaaaatccaaaatttctagc
ttgtttcctagcttggatttgcgacgcgcgtcggcttcgcgcgtgctggcgcttgcgcgc
aagctttctaggggtgttggcctcgagtgtcctccgttttgccacctgtccgaagcttgt
ataaaggcgttgtgtcgaagggctggcgcgctcgacgcgtccgggcgcctgcagctgttt
gatggtgtcactgggctgccgtttgatcagcagacggccgttggcagcatttacgtgcta
aagcttaaccatctggttgatgacaagatgtacgcgcgggctacaggcccctattccatg
gttacccagcagcctctcaagggcaaagccaacaagggggggcagaggttgggcgagatg
gaggtttgggcgcttcaaagctacggcgtgtcgtacatgttaaaggaggcgctcaccgcc
aagtgtgacgacgtggccgcgcgccacgtgatggcttcaagcattgctggctgcgcccct
cgcgtggagtcaagctgaggcgaaagcttgctgctgctggtaagagaaatgtgttctctg
tgcgttgattttaggtttgaatag
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