Candidatus Hodgkinia cicadicola Dsem: HCDSEM_067
Help
Entry
HCDSEM_067 CDS
T00938
Symbol
rpoC
Name
(GenBank) putative DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hci
Candidatus Hodgkinia cicadicola Dsem
Pathway
hci03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hci00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HCDSEM_067 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hci03021
]
HCDSEM_067 (rpoC)
03400 DNA repair and recombination proteins [BR:
hci03400
]
HCDSEM_067 (rpoC)
Enzymes [BR:
hci01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HCDSEM_067 (rpoC)
Transcription machinery [BR:
hci03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HCDSEM_067 (rpoC)
DNA repair and recombination proteins [BR:
hci03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HCDSEM_067 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
ACT34253
LinkDB
All DBs
Position
51730..55860
Genome browser
AA seq
1376 aa
AA seq
DB search
MAADCAADCAADCASLEDVDVGAAVGGLASSEAVRSVSLSLASPETVLSWSYGEIEHASS
YDFATGKPVEGGLFCPKIFGSSNEGECLCDEPTADDEMVCAVCGVEMAVGWRCARSRFAH
IDLAAPVVHAWFHGSALPILVLLTGQPTATLLKLISCDAHVVRSTTGGLIEGQIVDTDAL
RKAWSASSWRQLVSGGLAVRDLLAKCRPELVKRALALELAAAPPSAAAKLRKKLQLIEGF
VASKAKPTWAALEVLPVLPASLRPMVMLQADRCASSDLNELYSRIVSANRVVAAMYDALW
RGDHVACDEVLDGLRALQRSVDALIDNTSRSASEVRPTGRSSVALKSLTELLKGKRGRFR
QTLLGRRVDYSGRSVIAPGPELKLYECGLPRAMAAELFKPFVRAKLMLTCGVRSASKLKL
LTASRPELEARALCEVAEFWPVVLNRAPTLHKLSMQAFRARLTDSKVIRLHPLVCAGFNA
DFDGDQMAVHVPLSYEARAEALALMLSTRNVLHPAHGMLAIVPTQDMVLGLYYMTVVAAK
RADVRFASYADVNAALMARAVGLHTRVEFCASTDAGQVVIESTPGRLLVNELVPQACGFL
YTTSMPALSKSEIIKLTEDVLEVCGKREAVVFCEELMLLGFKHATLSGTSLACADLKACG
YKQRALQSARRAVARLAPGAAGFPNARRRRLAFAKVWADAVQKVHAAVDLDVARRDELQT
SVQVMLASGARGTPAQLRQLVGARGEVVGFGGTPCLMPVLASYRDGLSTAEFFYSTFAAR
RGLVDTVLKTASSGYLTRRLIEVAREYTVTELDCGEGEGLDVDVTTDLARAKHKLLGRLV
AKRVVESGRLLADVNEIITRRCVGLLAGAGCASVRIRSPLTCLAESGVCAACYGVNLSTG
KMAKLGEAVGVLAAQSIGEPGTQLTLRTFHGAGQAERVQSAQANAAHVVAACDGVISIQN
LACVRTLAGDVVVAGSRAVISVVSERAPPAEHVACRGARVLVADGERVHRGRVLCVLYAT
DERYVSLAFGSLHLEGVLCGVNAKRQLDAETGLTRFDLTASAQDGRQRVSVRSGFCGVAY
ELSSKLFSSLLAGAGAAVSVFDQVFSRQRQRPRPASIAQLEGLSKLSKLFDNQAGDVAVG
MTAPEAGWLRAGDSAPDGCVCVMDPDEPAKWPAVCYVRRPLHAACVRLERGDAIAPGDVD
MSAFASLHGFDRFANLFVDKVQQLFDYQGVSLNSKHIEVVLRQMTDTAVVTGAGSTALKP
GEVVAWRLLAETNALALAGGGVAATGLRRVVSVADACANHASLLSSISFYGAVKTLAELV
ISGGKHSVSAIKDHIIMGRLAPVGTGFWTRAFEASGVRSFALLLLLAGGEGRAWPQ
NT seq
4131 nt
NT seq
+upstream
nt +downstream
nt
gtggccgccgactgcgccgccgactgcgccgccgactgcgcctccctggaggacgttgat
gtgggcgctgcggttggcgggctagcaagcagcgaagccgtgcgcagcgttagcttgtcg
ctggcgtcgccagagacggtgctgtcgtggtcgtatggcgagattgagcacgccagctcg
tacgactttgctaccggcaagcccgttgaaggggggctgttctgtcctaaaatatttggc
tcgtctaacgagggcgagtgcttgtgcgacgagcctaccgctgacgacgaaatggtgtgc
gcggtgtgcggcgtggagatggcagtaggttggcggtgcgcgcgctcgcggtttgcgcac
atagacttggctgcgcccgttgtgcacgcgtgatttcatggctcagctttgccgattctg
gttttgctgactggacagcccacggccacgttgctaaagctgattagctgcgacgctcac
gttgtgcgctctacgactggaggcttgattgaaggtcagattgtggacactgacgcgctt
cgcaaagcttgaagcgctagctcgtggcgtcagctggtgtctggggggctggctgtgcgc
gacctgctggctaagtgtaggcctgagctagtaaagcgggctctggctcttgagctggca
gccgcgccgccgtccgcggctgctaagctgcgaaaaaagcttcagctaatagaggggttt
gtggcgtccaaagctaagccgacgtgagctgcgcttgaggtgctgccggtgctgccagct
agcctcaggccgatggttatgcttcaagctgacaggtgcgctagctcggatctaaacgag
ctgtatagtcggattgtgagcgcgaaccgcgtggtggctgcaatgtatgatgcgttgtgg
aggggcgatcacgtggcgtgcgacgaggtgctggacgggctgcgcgcgcttcagcgctcg
gtggacgcgcttatcgacaacaccagccggtcagcttctgaagtcaggcccaccggccgc
agctctgtagcgctcaagtcgttgactgagcttttaaaaggcaaaaggggtcgatttagg
caaacgctcctaggcaggcgcgtcgactactccggtcgcagcgttattgcgccggggccg
gagctcaagctttacgaatgcggtctgcctcgcgccatggctgccgagctgtttaagccg
ttcgttcgcgccaaactaatgctaacttgcggcgttagatcagctagcaagctgaagctg
ttaacggctagccgtccggagcttgaagctcgcgcgctttgcgaggtagccgagttctga
cctgtggttctcaaccgcgcgcccacgcttcacaagcttagcatgcaggcgtttagggcc
aggttgacggactcaaaagtgattaggcttcatccgctggtgtgtgctggctttaacgcc
gattttgacggtgatcagatggctgtgcacgtgcccctcagctacgaagccagggctgag
gcgctggcgctgatgctgtcaacgaggaacgtgctgcatcctgcgcatggcatgctggct
atagtacctacccaagacatggtgctagggctttattacatgacggttgtggccgcgaag
cgcgccgacgtgcgctttgcgtcgtacgccgacgtgaacgcagcgctgatggcgcgcgct
gtcggcttgcacacgcgagttgagttttgcgcttcgactgacgcggggcaggttgtgatt
gagtcgacgcctggtcggcttttggttaatgagcttgtgccccaagcttgcggcttcttg
tacacaactagcatgccggcgctgtcaaagtctgagattatcaagctgacagaagatgtg
cttgaggtgtgcggcaagcgcgaagccgtggtgttttgcgaggagctgatgctgcttggg
tttaagcacgctactttgtccggtacttcgctggcttgtgccgacttaaaggcgtgcggc
tacaagcagcgcgcgcttcaatccgcaaggcgcgctgtggctcggctggcgccgggggct
gctggctttcccaacgcccgccgtcgacggctggcgtttgcaaaggtgtgagctgacgct
gtacaaaaggtccacgctgctgtcgacttggatgtagccaggcgcgacgagcttcagacg
tcggtgcaggttatgctagcttctggcgctcgcggcacgccagctcagcttagacagctt
gtgggcgctaggggcgaggttgtgggctttggtggcacgccctgcttgatgccggtgctg
gcgtcgtatagggacgggctgtcaacagccgagtttttttactctacgtttgctgcgcgc
agggggcttgtggacacggtgctaaaaaccgctagctctggctacttgactcgaaggctg
attgaggtggcgcgtgagtacacggttactgagctggattgtggcgaaggcgaggggctg
gatgttgacgttacaactgatttggcgcgtgcaaaacacaagcttttgggtcgcctagtt
gctaagcgcgtggttgaaagtggcaggctgctagctgatgtcaacgaaattataactagg
cggtgtgttggcttgctggctggcgccggctgcgccagcgtgcgcatcaggtcgcctctt
acgtgcttagcagaaagcggcgtgtgcgcggcgtgctacggtgtcaacttgtctactggc
aagatggcaaagcttggcgaagccgttggtgtgctagcggctcagtctatcggtgagccc
ggcactcagcttactcttcgaacgtttcatggcgctggccaagctgagcgcgttcaaagc
gcgcaggctaatgcagctcatgtggtggcggcttgcgatggcgtgatcagcattcaaaat
ctggcttgcgtgcgcacgctagcgggcgacgtagtggttgctggttcgcgcgctgttatt
agcgtggttagcgagcgcgcgccgccagctgagcacgtcgcttgtcgtggcgcgcgcgtg
ctcgtcgctgacggcgagcgcgtgcacagaggcagagttttgtgcgtgctatatgctacc
gatgagcgctacgtgtcgctagcttttggaagcttgcaccttgaaggcgtgttgtgtggc
gtgaacgctaagcgtcagcttgacgccgaaacgggcttaaccaggttcgacttgacggct
tcggcgcaagatgggcgtcagcgcgtgagtgtgcgatctggtttttgtggcgtggcgtat
gagctgagctcgaaactgttttcaagcttgctagctggggctggcgctgccgttagcgtt
ttcgatcaggttttcagccgtcagcgtcagcgtccacgccctgcttccatcgcccagctt
gaaggcttgtccaagctgtccaagctgtttgataatcaggctggcgacgttgccgtggga
atgacggcgccggaggctggctgacttagagctggcgactcggcgcctgacggctgcgtg
tgtgtgatggatcctgatgagcctgctaagtggccagctgtgtgctacgttcgacgtccg
ctacacgctgcttgcgttcgcttggagcgcggcgacgcgatagcgcctggtgacgtcgac
atgtcggcgtttgcaagcttgcacgggtttgacaggtttgctaacttgtttgttgacaaa
gtccagcagctgttcgattaccagggtgttagcttaaacagtaagcatattgaggttgtg
ctaaggcaaatgacggacaccgccgtggtgacgggcgctggctctacggcgctaaagcca
ggtgaagtggtggcctgaaggctgctagctgaaaccaacgcgctggcgctagccggcggc
ggcgtcgcagctacgggcttgcggcgcgtagtgagtgtagctgacgcgtgcgctaaccac
gcgtcgctgctttctagcatttcgttttacggcgccgtcaaaacgctggctgagcttgta
atatctggtggcaagcattcggtttccgctattaaagaccacattataatgggcaggtta
gcgcctgtaggcacgggcttttgaactcgagctttcgaagctagcggcgttcgcagcttc
gcgctgctgctgctgcttgcggggggagaagggcgtgcgtggccacaataa
DBGET
integrated database retrieval system
