Candidatus Hodgkinia cicadicola Dsem: HCDSEM_092
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Entry
HCDSEM_092 CDS
T00938
Symbol
rpoA
Name
(GenBank) putative DNA-directed RNA polymerase, alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
hci
Candidatus Hodgkinia cicadicola Dsem
Pathway
hci03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hci00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HCDSEM_092 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hci03021
]
HCDSEM_092 (rpoA)
03400 DNA repair and recombination proteins [BR:
hci03400
]
HCDSEM_092 (rpoA)
Enzymes [BR:
hci01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HCDSEM_092 (rpoA)
Transcription machinery [BR:
hci03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HCDSEM_092 (rpoA)
DNA repair and recombination proteins [BR:
hci03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HCDSEM_092 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
Motif
Other DBs
NCBI-ProteinID:
ACT34278
LinkDB
All DBs
Position
68278..68964
Genome browser
AA seq
228 aa
AA seq
DB search
MGAALLTRAHKLTTLELEVWGWRAAHTLAVALRRTLMARVEGWAVVGLCVDGAAHALARA
EGVIEDVLGVAANAARIVFEGECGSRRVVKAVVRASAGVVTAGQLVLPEGLRVVNTNERV
CSVGAGCVFRAEFVVARGVGYMRAAQARARWSRVLAGYTVVDAHFSPVKRVSYKVSSAED
DRSCDRAQLVIETNGVDGAHAVVDACRELSRCFQLVGCSIARQLGVRA
NT seq
687 nt
NT seq
+upstream
nt +downstream
nt
ttgggggctgcgctgctgacgcgcgcccacaagctgactacgctcgagcttgaagtttgg
ggctggcgtgcagcgcacacgctagctgtggctctcaggcggacgttgatggcgcgtgtt
gagggctgggctgttgtcggcttgtgcgttgacggcgccgcccacgctttagctcgagct
gaaggcgtgatcgaagacgtgcttggcgtagcagctaacgccgcgcgcatagtgtttgaa
ggcgagtgtgggtcgcgtcgtgtggtcaaagccgttgtgcgcgcttcggctggtgtggta
actgccggccagcttgtgctgcccgaggggctgcgcgttgttaatacgaatgagcgcgtg
tgcagtgtgggcgccggctgcgtgttcagagctgagtttgttgtggcgcgcggtgtgggc
tacatgcgcgccgctcaagcacgcgcacgctgaagccgggttttggccggctacacggtg
gttgacgcacacttcagtcctgtaaaaagggtgtcgtacaaggtttcaagcgccgaagac
gacaggagctgcgacagagcgcagctggtgattgaaacaaatggcgttgacggcgcgcac
gcggttgtggacgcgtgccgcgagctgtcgcgctgctttcagctcgtgggctgctcgatt
gctcgccagctgggcgtgcgtgcttaa
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