Hydrogenimonas cancrithermarum: HCR_01600
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Entry
HCR_01600 CDS
T09533
Symbol
dbpA
Name
(GenBank) ATP-dependent RNA helicase
KO
K05591
ATP-dependent RNA helicase DbpA [EC:
5.6.2.6
]
Organism
hcj
Hydrogenimonas cancrithermarum
Brite
KEGG Orthology (KO) [BR:
hcj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
hcj03009
]
HCR_01600 (dbpA)
Enzymes [BR:
hcj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HCR_01600 (dbpA)
Ribosome biogenesis [BR:
hcj03009
]
Prokaryotic type
rRNA helicases
HCR_01600 (dbpA)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
CMS1
BscB_a-b
Motif
Other DBs
NCBI-ProteinID:
BDY11848
LinkDB
All DBs
Position
172365..173750
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AA seq
461 aa
AA seq
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MQSNLSFSTLPLSKEILKNLASLGYSSMTQIQARSLPHILKNRDVIAKAKTGSGKTAAFG
IGLLDKLDVKAFRIQEIVLCPTRELADQVAKELRRLARFTHNVKILTLCGGMPFGPQRRS
LEHGAHIIVGTPGRIQDHLGKGTLLLDNVHTLVLDEADRMLDMGFHDAILKIVSNIPKLR
QTLLFSATFPKNIEAMSKKVQNDAVTVIPDEAAYENKIAQYSVRTRREDKTECVLHLLSD
YRPKSAMLFCNTKLDVQEVARTLQNGGIHAKALHGDLEQLERTEVLVQFSNGSTPVLVAT
DVAARGLDIANLDMVINYDLPHDPEVYLHRIGRTGRAGNEGMAISLRAPYDEKKLKTIEG
YQKKTLEEIAMPERETKKEPLPLPQMQTLCIFGGKKEKLRPGDILGALAKDAGIEGRNIG
KIDIFDVYSYVAVVRSEIERAVKHFENGKIKGRAFKTKVCD
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
ttgcaatccaacctatccttttccaccctcccgctttcgaaagagatcctgaaaaatctc
gcttcgctgggctacagctccatgacacagatacaggcgcggagtctgccccatatcctt
aaaaacagggacgtcatcgccaaagccaaaaccggcagcggcaagacggcggcattcggc
atcggcctgctcgacaagctggatgtcaaagcgttccgtatccaggagatcgtactctgc
ccgacccgtgaacttgcagaccaggtggccaaagagcttcgccgtctggcacgctttacg
cacaatgtcaagattctgacactttgcggaggcatgcccttcggccctcaacgccgctcc
ctcgaacatggtgcccacattatcgtcggtacgcccggacgcattcaggatcatctgggc
aaagggacactgctgctggacaatgtccatacgctcgtgctcgacgaagccgaccgcatg
ctcgatatgggatttcacgatgcgatcttgaagatcgtttccaacataccaaaactgcgc
cagacactccttttttcggcgacattcccaaaaaatatcgaggcaatgagcaaaaaagta
caaaacgacgctgtcaccgtcatacccgatgaggcggcttatgaaaacaaaatcgcgcaa
tacagcgttcgaacgcgaagagaggacaaaacggagtgcgtcctgcatcttctcagcgac
taccgccccaaatcggccatgcttttttgcaacaccaagctcgacgttcaggaagtggcc
cgcacactgcaaaatggcggtattcatgccaaagcccttcacggggacctcgaacagctc
gaacgcaccgaggtactggtacagttttcgaacgggagcacgcccgtgctggtcgcgacg
gatgtggcggcgcgcggattggacatcgcgaatctcgatatggtcatcaattacgacctt
ccgcacgacccggaagtctatctgcaccgtatcggacggacgggacgtgccggaaacgag
ggtatggccatcagtctgagggctccttacgatgaaaaaaagctgaaaacgatcgagggg
tatcagaaaaaaacgcttgaagagatcgcgatgccggagcgcgaaaccaaaaaagaaccc
ctaccgctgccgcagatgcagacactctgcattttcggtgggaaaaaagagaagttgcgg
ccgggcgacattctgggggctttggcgaaagatgcagggatcgaggggcgaaatatcggg
aaaatcgatattttcgacgtttacagctatgtcgccgtagtacgctcggagatcgaacgt
gcagtcaagcacttcgaaaacggcaaaatcaagggacgggcattcaaaaccaaggtgtgt
gactga
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