Hydrogenimonas cancrithermarum: HCR_08350
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Entry
HCR_08350 CDS
T09533
Symbol
rhpA
Name
(GenBank) DEAD-box ATP-dependent RNA helicase RhpA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hcj
Hydrogenimonas cancrithermarum
Pathway
hcj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hcj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HCR_08350 (rhpA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hcj03019
]
HCR_08350 (rhpA)
03009 Ribosome biogenesis [BR:
hcj03009
]
HCR_08350 (rhpA)
Enzymes [BR:
hcj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HCR_08350 (rhpA)
Messenger RNA biogenesis [BR:
hcj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HCR_08350 (rhpA)
Ribosome biogenesis [BR:
hcj03009
]
Prokaryotic type
rRNA helicases
HCR_08350 (rhpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
BscB_a-b
Motif
Other DBs
NCBI-ProteinID:
BDY12523
UniProt:
A0ABM8FLG6
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All DBs
Position
complement(832093..833580)
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AA seq
495 aa
AA seq
DB search
MEQETIEQQTQEEQPEQSTMSFSDFGFKQPIMRAIDRMGFKVPSPIQEKVIPLILEGHDV
VGQAHTGTGKTAAFGLPALNNIEWRNGVDMLVITPTRELATQVSDELFSLGRFAGIRTVS
VYGGQSYRRQLDLISRGAQVVVATPGRLLDMLSSGKLEDFNPSIVVLDEADEMLDMGFLD
DIKEIFSYLPQQRQTLLFSATMPEPIKDLARHILHEPKFVSVTKKETTNKDIRQLYYVIE
EKDRDDAIVRLLDKEEPEKAIVFCRMKREVDRVAELLQAQGVNARGLHGDMEMRERMEVI
KGFRGRDIDILVATDVAARGLNIENVSHVFNYHIPFDPESYVHRIGRTGRAGKKGTAITL
VTPLEFKELERIRQKVGTKMEYGFVDEGGESAENVAERFLDAVREQDINQEAVKIYEVLE
NEMAPQKVAYKLISMILDKGILSRQGSGIGLSQDEVERLMAMSGVGEKSKKGGNRKRRSG
GGGGNRRRSGGGRRY
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atggaacaagagacaatcgaacaacagacacaagaagagcagccggagcaatccacgatg
agtttttccgatttcggattcaaacagccgatcatgcgtgcgatcgaccgtatgggattc
aaagtgccgagcccgattcaggagaaggtcatacctttgattctcgaaggccacgatgtc
gtcggacaggcgcatacgggtacgggcaagacggcggcgttcggtctgccggcgctcaac
aatatcgaatggcgcaacggtgtcgatatgttggtcattaccccgacgcgcgaactggcg
acacaggtgagtgacgaacttttcagcctcgggcgtttcgcggggattcgcaccgtcagc
gtctacggcggacaaagttatcgccggcagctcgacctgatcagtcgtggggcacaggtg
gtcgtcgcgacgcctggccgccttctggatatgctcagcagcggaaaactcgaagatttc
aacccctccatcgtcgttctggacgaggccgatgaaatgctggacatgggctttctggac
gacatcaaagagatcttcagttatcttccgcagcagcgtcaaaccctgcttttctccgcg
acgatgcccgaacccatcaaagacctggcacgccacatcctgcatgagccgaaattcgta
tccgttaccaagaaagagacgaccaacaaggatatccgccagctctactacgtcatcgaa
gagaaagaccgtgacgatgcgatcgtgagacttctggataaagaggagcccgaaaaggcg
atcgtcttctgtcgcatgaaacgcgaagtcgaccgggtggcggagcttctgcaggcacag
ggcgtcaacgccagaggccttcacggcgacatggagatgcgtgagcgcatggaggtgatc
aaagggttccgcgggcgagatatcgacatcctggtcgcgaccgacgtcgcggcgcgcggg
ctcaacatcgagaacgtcagtcacgttttcaactatcacattccgttcgatccggagagc
tacgttcaccgcatcggccgtacgggacgcgcgggcaagaaggggacggcgatcacgctg
gtgacccctttggagttcaaagagctcgagcgtatccggcagaaggtcggtacgaagatg
gagtacggcttcgtcgacgaaggcggtgaatctgcggaaaacgtcgccgagcgctttctc
gacgccgttcgtgaacaggatatcaaccaggaagcggtgaagatatacgaagtgctcgag
aacgagatggcaccccaaaaagttgcctataaactgatctccatgattctcgacaagggt
attttgtctcggcagggaagtggcatcgggctgagtcaggatgaggtcgagcgtctgatg
gcgatgagcggtgtcggcgagaaatcgaaaaaaggcggcaaccgcaaacgccgcagcggc
ggtggcggcggaaatcgccgaagaagcggtggcggccgtcgctactaa
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