Hydrogenimonas cancrithermarum: HCR_08420
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Entry
HCR_08420 CDS
T09533
Symbol
fliA
Name
(GenBank) RNA polymerase sigma factor FliA
KO
K02405
RNA polymerase sigma factor FliA
Organism
hcj
Hydrogenimonas cancrithermarum
Pathway
hcj02020
Two-component system
hcj02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hcj00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
HCR_08420 (fliA)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HCR_08420 (fliA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hcj03021
]
HCR_08420 (fliA)
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
hcj02035
]
HCR_08420 (fliA)
Transcription machinery [BR:
hcj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HCR_08420 (fliA)
Bacterial motility proteins [BR:
hcj02035
]
Flagellar system
Flagellar assembly proteins
Stator
HCR_08420 (fliA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r4_2
Sigma70_r3
HTH_23
HTH_5
DUF1292
Motif
Other DBs
NCBI-ProteinID:
BDY12530
UniProt:
A0ABN6WTU8
LinkDB
All DBs
Position
complement(840807..841490)
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AA seq
227 aa
AA seq
DB search
MLMNKGYHDQIRHYQDELAVRYLPAVKAMAYRLKERLPRSVEFDDLVSIGAEELIKLARR
YDKNQNDSFWGYGKTRVYGAMLDYLRSLDIVSRANRKLIKMIDEIIAQYMDEHGVEPENS
YIAAVLHEDEQKIKEARRVAAIYNVLPLDDQLESDQKDTFSQIEQEELIEKIKEILETMP
RRDQLIMQMYYFEELTYKEISEILDITPSRISQVHKRVITKIRDSIG
NT seq
684 nt
NT seq
+upstream
nt +downstream
nt
atgctgatgaacaaaggttatcacgaccagattcgccactatcaggatgagctcgccgtt
cgatatctgccggctgtcaaggcgatggcctaccgtctcaaagagcgcttgccccggtcc
gtcgagttcgacgacctcgtcagtatcggagccgaagaattgatcaaacttgcaagacgc
tatgacaagaaccagaacgactccttctggggatatggaaaaacacgtgtctacggggcg
atgctcgattatctccgttcgctcgacattgtcagccgcgccaaccggaaattgatcaag
atgatcgacgaaattatcgcgcagtatatggacgagcacggtgtggaaccggaaaacagt
tatatcgccgctgttttgcatgaggatgaacagaagatcaaagaggcgcgccgtgtcgcc
gcgatctacaatgttcttccccttgacgaccagctcgagagtgaccagaaagataccttt
tcacagatcgaacaggaggagctgatcgagaagatcaaggagattctcgagacgatgccg
aggcgcgatcagctcattatgcagatgtactatttcgaagaattgacctacaaagagatt
tcggagattctcgatatcacaccctcgaggatctcccaggtgcacaagcgtgtcataacg
aaaatcagagatagcatagggtag
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