Hydrogenimonas cancrithermarum: HCR_11670
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Entry
HCR_11670 CDS
T09533
Symbol
topA_1
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
hcj
Hydrogenimonas cancrithermarum
Brite
KEGG Orthology (KO) [BR:
hcj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hcj03032
]
HCR_11670 (topA_1)
03400 DNA repair and recombination proteins [BR:
hcj03400
]
HCR_11670 (topA_1)
Enzymes [BR:
hcj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HCR_11670 (topA_1)
DNA replication proteins [BR:
hcj03032
]
Prokaryotic type
DNA Topoisomerases
HCR_11670 (topA_1)
DNA repair and recombination proteins [BR:
hcj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HCR_11670 (topA_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Zn_ribbon_recom
ADK_lid
DNA_ligase_ZBD
Auto_anti-p27
Zn_ribbon_TFIIB
Zn_Ribbon_TF
Toprim_4
DUF7129
DUF7573
Zn_ribbon_RPB9
Toprim_2
Cas12f1-like_TNB
Motif
Other DBs
NCBI-ProteinID:
BDY12855
LinkDB
All DBs
Position
1156644..1158851
Genome browser
AA seq
735 aa
AA seq
DB search
MKNLIIVESPAKARTIKNFLGKDYEVIASKGHIRDLPKHSFGIKIEDDRFEPQYRVDKDH
SAIVKQIKDLAKKSDQVYIATDEDREGEAIGYHIAKAIGKDPEALPRIVFHEITKSAIQH
ALENPRKIDMDQVNAQQARRLLDRIVGYKLSPLLASKIQKGLSAGRVQSAALKIVVDRER
EIQAFKPVEYWSVDAVFRPEIEAGLVEYRGKKIEKMTIGDEKEAREIEATLKGETYRVKS
IEKRQRKSSTPPPFMTSTLQQSASGRLSFSPKKTMMIAQKLYEGVKTDQGQMGVITYMRT
DSLNIAKEARDAARETILKTYGEKYLPPKPKIYSSKAKGAQEAHEAIRPTRLDFTPQIAA
KYLAPDELKLYKLIYNRFLASQMADAILESQTILFASEHGVFKATGRKLLFDGFYRVMGY
DDRDKLLPELKEGEEVPLEKLTANQHFTEPPPRYTEASLIKKLESLGIGRPSTYAPTISL
LVSREYLKIEKRQLIPTPIAFTVIEILEKHFPEIVDSNFTAEMEEKLDEVAEKKVDWQKL
LLDFYQPFIEKVEKGKKEIKSLKKAEPIGRECPECGSELLLRSGRYGDFIACSNYPKCRY
TEAIEKEGEEKPTPQTTDEVCDKCGAPMVIKSGRRGAFLACSAYPKCKNTKPLEKPKTLE
VKCPECGGELLERNSRRGKFFGCSNYPKCTFVSKFEPTEKKCPECGYPMARRTFRGKEVY
ECIKCKHREDAEPAS
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaaacctcatcatcgtcgagtcgccggccaaagcgcgcaccatcaaaaattttctg
gggaaagattacgaagtgatcgcctccaaggggcacattcgcgaccttcccaaacacagc
ttcggcatcaagatcgaagatgacaggttcgaaccgcagtatcgggtggacaaggaccac
agtgccatcgtcaagcagatcaaggatctggccaaaaagagcgaccaggtctacatcgcg
acggacgaggaccgcgaaggggaggcgatcggctaccatatcgccaaggcgatcggcaaa
gacccggaagcgctgccgcgcatcgtctttcacgaaatcaccaagagcgccatccagcac
gcgctggaaaacccgcgcaaaatcgacatggaccaggtcaacgcccagcaggcgcgccgg
cttctcgaccgcatcgtcggctacaagctctcgcctctgttggcttccaaaatacaaaaa
gggctgagcgccgggcgcgtccagtcggcggcactgaagatcgtcgtcgaccgcgaacgg
gaaatccaggcgttcaaaccggtcgagtactggagcgtcgatgccgttttcagaccggaa
atcgaagcggggcttgtcgaatacaggggcaagaagatcgaaaaaatgacgatcggcgac
gagaaagaggcgcgtgaaatcgaagcgacgctgaagggcgaaacctaccgcgtcaaaagc
atcgagaagcgacagcgcaagagctcgacaccgccgccattcatgacgtcgacgctgcag
caaagcgcttcggggcgcctcagtttctcgcccaaaaagacgatgatgatcgcacagaag
ctttatgaaggcgtcaagaccgatcagggacagatgggggtcatcacctacatgcgtacc
gacagcctcaacatcgccaaagaggcgcgcgacgcggcacgcgagaccattttgaaaacc
tacggggagaaatacctgccgcccaagccgaagatctacagttccaaagccaaaggcgcg
caggaggcgcacgaagcgatccgcccgacgcgtctcgacttcacaccccagatcgcggcg
aagtacctggcacccgacgaactgaaactctataaactcatctacaaccgctttctcgcc
agccagatggccgacgcgattctcgagtcgcaaaccatcctcttcgcctccgaacacggc
gtcttcaaggcaacgggccggaaactgctcttcgacggtttctaccgtgtcatgggctac
gacgacagggacaaactgctccccgaactgaaagagggcgaagaggtgccattggagaaa
ctgacggccaaccagcacttcaccgaaccgccgccacgctacacggaagccagcctcatc
aaaaaactcgaatccctcggcatcggccgtccgagtacctacgcaccgaccatctcgctg
ctggtttcgcgcgaatacctcaagatcgaaaagcggcagctgatcccgaccccgatcgcc
ttcaccgtcatcgaaattctcgagaaacacttcccggaaatcgtcgactccaattttacc
gccgagatggaggagaaactcgacgaagtggccgagaagaaggtcgactggcaaaaactt
ctgctcgatttctaccaacccttcatcgaaaaggtcgaaaaggggaaaaaagagatcaag
agcctcaaaaaggccgaacccatcggacgtgaatgtcccgaatgcgggagtgaactgctg
cttcgaagcggccgttacggtgacttcatcgcctgcagcaactaccccaaatgccgctat
accgaagcgatcgagaaggagggtgaagagaaacccacaccgcagacgacggatgaagtg
tgcgacaagtgcggtgcaccgatggtcatcaagagcggccggcgcggagcgtttctcgcc
tgcagcgcgtaccccaaatgcaaaaacaccaaaccgctcgaaaagcccaagacactcgag
gtcaagtgtcccgaatgcggcggcgaactgctcgagcgcaactcgcgccgcggcaaattc
ttcggctgcagcaactacccgaagtgcaccttcgtaagcaagttcgagccgaccgagaag
aaatgccccgagtgtggctacccgatggcacggcgtaccttccgcggcaaagaggtttat
gagtgcatcaagtgcaaacaccgggaggatgccgagccggcatcctga
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