Hydrogenimonas cancrithermarum: HCR_12250
Help
Entry
HCR_12250 CDS
T09533
Symbol
recJ_1
Name
(GenBank) single-stranded-DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
hcj
Hydrogenimonas cancrithermarum
Pathway
hcj03410
Base excision repair
hcj03430
Mismatch repair
hcj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hcj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HCR_12250 (recJ_1)
03430 Mismatch repair
HCR_12250 (recJ_1)
03440 Homologous recombination
HCR_12250 (recJ_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hcj03400
]
HCR_12250 (recJ_1)
DNA repair and recombination proteins [BR:
hcj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
HCR_12250 (recJ_1)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
HCR_12250 (recJ_1)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HCR_12250 (recJ_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
BDY12913
LinkDB
All DBs
Position
complement(1208218..1209795)
Genome browser
AA seq
525 aa
AA seq
DB search
MSNLPRLTKAKIAALLAARFDDGFKTLKELPSPFELHDMERAAERIVKAIERKERIVVIG
DYDVDGVVSSALMEEFFEIIGYPVEVIIPNRFRDGYGISPKILERVDADVVMTVDNGITA
IDAAEVCRRRGIDLIITDHHTPSETLPDAYAIVNPKKEECSFAYPEICGAQVAWFLIGAL
KQRLGLDLRMGRFLDLLALAIVADVMPLTSINRPLVKKGIEMLSISQRPAFEAVRAYLGK
SRFGAEDIGYGIAPRINSAGRMEDASIALRFLRAKTLSDASREWMELDNLNQMRRRIETE
TTEAAFAMANPSDSVIVVAGEGWHDGVVGIVASRLVDRFKKPAIVLSIENGVAKGSGRSI
GEVDLFSLLDDCSGYLDGFGGHKMAAGLRLDAERVDAFRAALCKTASALDPELFFPKEHL
MGELPITEVDWELMEILSRFEPYGEANIKPRFLIKDISIIDARVIGAEKNHLKLILGSSD
RKLQAIQFGYEKMVEIGQKVAVTGSLQINEFNNKRSVQMLIDKIH
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atgagtaatctgccgcgtttgacaaaagcgaagatcgccgcacttctcgcggcgcgattc
gatgatggcttcaaaaccctcaaagagctccccagccctttcgaacttcacgacatggaa
cgtgccgccgaacgcatcgtgaaggcgatcgaacgcaaagagcgcatcgtcgtcattggc
gactacgatgtcgacggtgtcgtctcttcggcactgatggaggagtttttcgaaatcatc
ggatatccggtcgaagtgattatccccaaccggttccgtgacggatacggcatttctccg
aaaatcctggagagggtcgatgcggatgtcgtgatgactgtcgacaacggcatcaccgcg
atcgatgcggcggaggtttgcagaaggcgcggtatcgatttgatcattacggaccaccac
accccttccgaaacgcttcccgatgcctatgccatcgtcaatccaaaaaaagaggagtgc
agtttcgcctatcccgaaatctgtggggcgcaggtggcatggtttctgatcggtgcgctg
aaacagcggttgggcctcgatcttaggatggggagatttctcgatctgctcgcattggcg
atcgtcgccgatgtgatgccgctgacatcgatcaaccggccactcgtgaaaaaggggatc
gagatgctctcgatatcgcagcgccccgctttcgaagcggtacgcgcctatcttggcaag
agccgtttcggtgcagaagatatcggttatggcatcgctccccgcatcaatagtgcagga
cgaatggaggatgcgtcgatcgcgctgaggtttttgagagccaaaacgctcagcgatgcg
agcagggagtggatggagctcgacaatctcaaccagatgcgaaggcgaatcgaaacggag
acgaccgaagcagctttcgccatggccaatccgtccgattctgtcatcgtcgtggcaggg
gaggggtggcacgacggtgtcgtcggtatcgtggcatcccgactggtggatcgtttcaaa
aagccggccatcgtcctttccatagagaatggtgtggccaaaggaagcggcagaagtatc
ggcgaggtcgaccttttttcccttctcgacgattgcagcggatatctcgatggtttcgga
gggcataaaatggcggccggattgaggctcgatgccgagagggtggatgctttccgtgcc
gcattgtgtaaaacggcttctgcgctcgatccggaactcttctttccgaaagagcatctg
atgggagaactccccatcaccgaagtggattgggagttgatggagattctctccagattc
gagccttatggtgaggccaatatcaagccaagatttcttattaaagatatcagtataatt
gatgcaagagtgatcggtgcagaaaaaaatcatctgaaactgattctcggaagttcggat
agaaagctccaggcgattcaatttggatacgaaaaaatggtcgaaatcggtcagaaagtc
gcagttacgggctctttgcagatcaatgaattcaacaacaaacggtcggttcagatgctc
atcgataaaatacattga
DBGET
integrated database retrieval system
