Hydrogenimonas cancrithermarum: HCR_15720
Help
Entry
HCR_15720 CDS
T09533
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hcj
Hydrogenimonas cancrithermarum
Pathway
hcj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hcj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HCR_15720 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hcj03021
]
HCR_15720 (rpoC)
03400 DNA repair and recombination proteins [BR:
hcj03400
]
HCR_15720 (rpoC)
Enzymes [BR:
hcj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HCR_15720 (rpoC)
Transcription machinery [BR:
hcj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HCR_15720 (rpoC)
DNA repair and recombination proteins [BR:
hcj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HCR_15720 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
BDY13260
LinkDB
All DBs
Position
1534912..1539429
Genome browser
AA seq
1505 aa
AA seq
DB search
MKKLVPIEVTEENRPKDIKAIQLRLASPEKILSWSYGEVKKPETINYRTLKPERDGLFCA
KIFGPVRDYECLCGKYKKMRYKGVVCEKCGVEVTTSKVRRYRMGHIDLVTPVAHIWYVNS
LPSRIGTLLGVKMKDLERVLYYEAYIVENPGEASYDNEGKAPVLKYDILNEEQFQSLFQR
FGDSGFHAEMGGEVIKRLLSDLDLAELFHTLKEEVEKTGSEAKRKTFVKRLKVIESFLNS
NNRPEWMMLDVLPVLPPDLRPLVALDGGKFAVSDVNDLYRRVINRNQRLKRLMELDAPEI
IIRNEKRMLQESVDALFDNGRRGNAVKGANKRPLKSLSEVIKGKQGRFRQNLLGKRVDFS
GRSVIVVGPNLRMDQCGLPKNMALELFKPHLLAKLEEKGYATTLKAAKNMIEQKTNEVWE
CLQEIVDEYPVMLNRAPTLHKLSIQAFHPVLIDGKAIQLHPLVCAAFNADFDGDQMAVHV
PLGQEAIAECKLLMLSSMNILLPASGKAITVPSQDMVLGLYYLSLERKDVKGSNKLFANV
KEVLTALDGEHLDINARVRTMVDGRVVYTTAGRLILKSILPDFVPEHMWNKVLKKKDIGL
LIDHVYKFGGLEITAEFLDNLKDLGFKYATMAGISISADDIRIPDAKYKLVDDAKKRVRE
IQQQYSAGLLTEQERYNKIVDVWTDTNNAVAEEMMKLIREDKDGFNSIFMMADSGARGSA
AQIRQLAGMRGLMAKPDGSIIETPIVSNFKEGLNVLEYFISTHGARKGLADTALKTANAG
YLTRKLIDVAQNVKVTMEDCGTHEGVEITDITIGSEMIEPLEDRVHGRVLADDVIDPISN
EILISEGTLIDDEKAQLIKDAGVRAVTIRTPITCKAPNGVCSKCYGLNMGEGKHVKVGEA
IGIIAAQSIGEPGTQLTLRTFHIGGTASSEKAERQAIATKEGFIRYYNLKTYSSREGKLL
VANRRNAGILLVEPKIKAPFSGELTVQTIHEEVILTLKNGDEKVRYALRKSDVAKPNELA
GVSGKIEGKFYLPHASGTKVEEHDSIVEVIKDGWNVPNRIPYAAELRVKDGAPVTQTIKA
GENGTLKYFQLKGDYLERYTGVNVGDKVEEKGLFAVVADDEGREANRHYIARGSIIKVGD
DEKVTADTVIAEPVSTEHTIIAEWDPYTDPIIAEANGKVTFEDIIPGITASEQFDEITGQ
TRLEINEYTPPGYKPAIVLATENGDIIRYTMEPKTAIYIQDGQDVHIADIIAKTPKAVAK
SRDITGGLPRVSELFEARRPKDPALIAEIDGVVAFGKPLRGKERIIITDENGQTSEYLVD
KNRQILVHNGEFVHAGEKLTDGTVSSHDILRILGEKALHYYMVSEIQQVYRRQGVNISDK
HIEIIYSQMLRQVRIVDSGNTKFIAGDLVSRRQFTEENERIMKLGGEPAIAEPVLVGITR
AAVSSDSFISAASFQDTTKVLTEASISAKIDPLEDLKENVIIGRLIPVGTGLYRQDKVKL
ERGVD
NT seq
4518 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaactggttccaattgaagtaacggaagagaatcgtccgaaagatatcaaggcg
attcagctcagactggcatctccggagaagattctctcctggagctacggtgaagtcaaa
aagcccgaaacgatcaactaccgaacactgaaacccgagcgcgacggcctcttctgtgcg
aagattttcggtcctgtcagggattatgaatgtctctgcggaaagtacaagaagatgcgc
tacaaaggtgtcgtatgcgaaaaatgtggcgtcgaggttacaacgtcgaaagttcgccgt
taccgtatgggccacatcgatctggtcactccggtcgcgcatatctggtatgtcaattcg
ctgccaagccgtattgggacgcttcttggcgttaaaatgaaagatctcgagcgtgtactc
tactatgaagcgtacattgtcgaaaatccgggcgaagcgagttatgacaacgaggggaaa
gcacccgttctgaaatacgacattctcaacgaagagcagttccagtcacttttccagcgc
tttggcgacagcggattccatgcggagatgggcggagaggtcatcaagcgtcttctgtcg
gatctcgatctcgccgaactcttccatactctgaaagaagaggtcgaaaaaaccggaagc
gaagcgaagcgaaaaacctttgttaagcgtctcaaagtgatcgaatcgtttctgaactcc
aacaaccgtcccgagtggatgatgctcgacgttctgccggttctacctccggatcttcgc
ccgctcgtcgcgctcgatggcggcaagttcgctgtttcggacgtcaacgatctctatcgc
cgggttatcaaccgcaaccagcgactcaagcgcctgatggagctcgatgcgccggagatc
attatccgaaacgaaaagcgcatgctccaggagtcggtcgatgcactcttcgacaatggc
cgccgtggcaatgccgtcaaaggcgccaacaaacgaccgctcaaatcgctcagcgaagtg
atcaagggtaaacagggacgtttccgacagaaccttctgggtaaacgtgtcgatttctcg
ggacgttctgttattgtcgtcggcccgaatcttcgtatggaccagtgcggtctgccgaaa
aacatggcgctcgaactcttcaaaccgcatcttcttgcgaaactcgaagagaagggttat
gcgacgacgctcaaagccgcaaaaaatatgatcgagcagaagacgaacgaagtatgggag
tgtctgcaggagattgtcgacgagtatcccgttatgctcaaccgtgcgccgacactgcac
aaactctcgatccaggccttccatccggttctgatcgatgggaaagcgattcagctccat
ccactcgtctgtgcggccttcaacgccgacttcgacggcgaccagatggcggtccacgta
ccgcttggtcaggaggcgatcgccgagtgtaaactcttgatgctcagctccatgaacatc
ctgctgcctgcaagcggcaaggcgatcacggttccgagccaggatatggtcctgggactc
tattatctttcgctcgagcgtaaggatgtcaagggctccaacaagctcttcgccaacgtc
aaagaggtccttacggcactcgatggcgagcacctcgacatcaatgcacgtgtccgcacg
atggtcgatggccgcgttgtctatacgacggcgggccgcctgatcctcaagtcgattctt
cctgacttcgttcccgagcatatgtggaacaaagtgttgaagaagaaagatatcgggttg
cttatcgaccatgtctacaaattcggcggcctcgagattacggcggagttcctcgacaat
ctcaaggacctcggtttcaaatatgcgacgatggcagggatttcgatctccgccgacgat
atccgtattccggatgcgaagtacaaactggtcgacgatgcgaagaagcgtgtccgtgaa
attcagcagcagtacagtgcgggacttttgacggagcaggagcgctacaacaagatcgtc
gacgtctggaccgacacgaacaacgccgtcgcagaagagatgatgaaactgatccgtgaa
gacaaagatggcttcaactcgatctttatgatggccgactccggggcacgtggttctgcc
gcacagattcgccagctcgcaggtatgcgcggacttatggcgaaaccggacggatcgatt
atcgaaacgccgatcgtctcgaactttaaagagggtctgaacgttctggaatacttcatt
tcgacccacggtgcgcgtaaaggtctcgcggatacggcgctcaaaacggcgaatgccggt
tacctgacccgtaaactgatcgacgtcgcgcagaacgtcaaggtcacgatggaggattgt
ggaacgcacgaaggtgtcgaaattaccgacatcacgatcggttccgagatgatcgagcca
ctcgaagaccgtgtccacggccgtgtccttgccgacgacgtcatcgatccgatcagcaat
gaaattctgatctccgagggaacgttgatcgacgatgaaaaagcgcagcttatcaaagat
gcaggtgtccgtgccgttacgatccgtacgccgatcacatgtaaagcaccgaacggtgtc
tgctcgaaatgttacggtctcaacatgggtgaaggaaaacatgtcaaggtgggcgaagcg
atcggtatcatcgcggctcagtcgattggggagccgggtacgcagctgacgcttcgaacc
ttccacatcggtggtacggcatcgagcgagaaggcggagcgtcaggcgattgcaaccaaa
gagggcttcattcgctactataacctgaagacctactcgagtcgtgaaggcaaacttctg
gtagccaaccgtcgaaatgccggtatccttctggtcgagccgaaaatcaaagcccctttc
agcggagagttgacggttcagacgattcatgaagaggtgatcctgacgctcaagaatggc
gacgaaaaggtccgttacgcactgcgcaagagcgacgttgccaagccgaatgaactcgcg
ggtgtcagcggcaagatcgaaggaaaattctatcttccgcatgccagcggaacgaaagtc
gaggagcacgattcgatcgtcgaggtgataaaagacggctggaatgtcccgaatcgtatt
ccgtatgcggcggaactacgcgtaaaagatggcgcaccagtgacgcagacgatcaaagcg
ggtgaaaacggaacactcaaatacttccagcttaaaggtgactacctcgagcgatacaca
ggcgtgaatgtcggtgacaaagtggaagagaaaggccttttcgccgtcgttgcggatgac
gaagggcgcgaagcgaatcgccactatatcgcacgcggttcgatcatcaaggtaggtgac
gacgagaaagtgacggccgataccgttatcgcggagccggtgagcaccgaacatacgatc
atcgccgagtgggacccttataccgatccgatcatcgcagaagcgaacggaaaggtgacg
ttcgaagatatcattccggggattacggcgagcgagcagttcgacgaaattaccggacag
acacgtctcgagatcaacgagtatacaccgcctgggtacaagcctgcaatcgtcctggca
acggagaacggcgatattatccgctatacgatggagccgaaaacggcgatctacatccag
gatggccaggacgtgcatatcgcggacattatcgcgaagacgccgaaagcggtcgcgaaa
tcgcgcgacattaccgggggtcttcctcgggtcagcgaactattcgaagcgcgtcgtccg
aaagatccggcgctcattgccgagatcgacggagtcgtggcgttcggaaaaccgcttcgc
ggcaaggaacgcatcatcatcacggatgaaaatggccagaccagcgaataccttgtcgac
aagaaccggcagattctcgttcacaacggcgaattcgtccatgcgggtgagaaactgacc
gacggtacggtttccagccacgatattctcagaattctcggtgaaaaagcgctgcactac
tatatggtcagcgagattcagcaagtctaccgacgccagggggtcaatatctccgacaag
catatcgagatcatctactcgcagatgcttcgccaggtgcgtatcgtcgacagtgggaac
acgaaatttatcgcgggcgatcttgtgagcagacggcagtttacggaagagaacgagcgc
attatgaagttgggcggcgagccggccatcgccgaacctgttcttgtcggtattacgcgt
gcggctgtcagttccgacagtttcatttcggcggcatctttccaggatacgacgaaggtt
ctgaccgaagcgagtatctctgcgaagatcgatccgcttgaagacctgaaagagaacgtc
atcattggacgactcattcccgtgggaacaggcctttacaggcaggacaaagtgaagttg
gaaagaggagtggattga
DBGET
integrated database retrieval system
