Hydrogenimonas cancrithermarum: HCR_15880
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Entry
HCR_15880 CDS
T09533
Symbol
nfo
Name
(GenBank) putative endonuclease 4
KO
K01151
deoxyribonuclease IV [EC:
3.1.21.2
]
Organism
hcj
Hydrogenimonas cancrithermarum
Pathway
hcj03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
hcj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HCR_15880 (nfo)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hcj03400
]
HCR_15880 (nfo)
Enzymes [BR:
hcj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.21 Endodeoxyribonucleases producing 5'-phosphomonoesters
3.1.21.2 deoxyribonuclease IV
HCR_15880 (nfo)
DNA repair and recombination proteins [BR:
hcj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
HCR_15880 (nfo)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AP_endonuc_2
ACT_3
Motif
Other DBs
NCBI-ProteinID:
BDY13276
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All DBs
Position
1555173..1556018
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AA seq
281 aa
AA seq
DB search
MKYVGAHVSASGGVFNAPLNAKAIGAKAFALFTKNQRQWTAKPLDEETIEKFKANLKASG
IDARHVLPHDSYLINLGHPEEEKRQKSLDAFIDEVKRCEQLGLDKLNFHPGSHLKKLSEE
ACLDRIAEAMNITLNETEGVTLVIENTAGQGSNLGYKFEHLAYLIDKTEDKSRVGVCLDT
CHTFTAGYDLRTKEAYDETMKAFDEIVGFEYLKGMHINDSKPPLGSRVDRHHSLGCGEIG
WDAFKYIMNDPRMDDIPLVLETIDESIWAQEIRALYDLVEK
NT seq
846 nt
NT seq
+upstream
nt +downstream
nt
atgaagtatgtcggtgcccacgtttccgcttccggcggtgtcttcaacgcccctttgaat
gccaaagccatcggtgcgaaagcctttgccctttttacgaaaaaccagcgccagtggacg
gcgaagccgctcgatgaagagacgatcgagaagttcaaagccaatctgaaagccagcggc
atcgatgccagacatgtcctgccgcacgacagctacctgatcaacctgggacatcctgaa
gaggagaagcgtcaaaagagtctggacgcttttatcgatgaggtcaaacggtgcgaacag
ctgggactcgacaagctcaacttccatcccggaagccatctgaagaagcttagcgaagag
gcgtgcctcgatcgtatcgcagaagcgatgaacattacgctcaatgaaaccgaaggggtg
acactcgtcatcgaaaatacggcgggacaggggagtaacctgggctataagttcgagcac
ctcgcctatctgatcgacaaaacagaagataaaagcagagtcggtgtctgtctcgatacc
tgccacacctttacggccggttacgatttgcgcacgaaagaggcgtacgacgagacgatg
aaagcgttcgacgagatcgttggattcgagtatctgaaagggatgcacatcaacgactcc
aaaccgcctctcggaagccgtgtcgaccgccaccactctcttggttgcggcgaaatcggc
tgggatgccttcaaatacattatgaacgatccgaggatggatgatataccgctggttctg
gagacgatcgacgagtcgatctgggcccaggagattcgggctctttacgatctggtggaa
aagtga
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