Hydrogenimonas cancrithermarum: HCR_17000
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Entry
HCR_17000 CDS
T09533
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hcj
Hydrogenimonas cancrithermarum
Pathway
hcj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hcj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HCR_17000 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hcj03400
]
HCR_17000 (mfd)
Enzymes [BR:
hcj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HCR_17000 (mfd)
DNA repair and recombination proteins [BR:
hcj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HCR_17000 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
NEPRO_N
AAA_16
UB2H
AAA_30
Motif
Other DBs
NCBI-ProteinID:
BDY13388
LinkDB
All DBs
Position
1668673..1671675
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AA seq
1000 aa
AA seq
DB search
MIEANLYDYFEKSKAPQILLVENDKEAQTAATVATLHGIESVVLPDFRATYGEDLRSWRE
ELFALNDALKRYYEKIIQNPKSKIQNPILIAPYHTLLYPLPKPELMQTFSLAFGDDLDLE
ALKEKLYAWGYSFVDVVETKGEVSIRGDIVDIFSPGSEKPWRISLFDTEVESIRTFEVES
QKSNKEEELEEVVVEPALFSLTKPAFEALQKRVELSDSDVFVKDVASLGLWFLEDLAHDL
MAGKMAVAVKDLADEVAFAYEHAKNALPKARFDVEVVPETGRVKAIEPINVDLLTENYPE
RELVIVAASEALVRRSPIKELARATIVKAEGAVNLLTPEKIIVSLNKPFKKRAVKRPTIL
LDDLKPGDYVVHENYGVGIFKGIEPHQVLGAVRDFVHIAYQNDDTLLLPVENLDMIDRYI
AEGGSLPALDRLGKGGFGKLKAKVKERLFAIASEIVNMSAKRMLIKGAVIDTDIPELFEF
REASGFEYTPDQITAVEEIFADLSSGRVMDRLLSGDVGFGKTEVAMNAILAVAKSGYQSA
FVVPTTLLSAQHFKSVEARLAPFGVRIDKLDRFTTAKRKRQILEELEKGELDLVVGTHAL
LGAKFKNLGLVIIDEEHKFGVKQKEALKLLSENVHLLSMSATPIPRSLNMALSKIKGYSE
LRTPPVERKGVRTFVKSFDETVVKEAIMRELRRGGQLFYVYNSIAGIESKKSELLEILPG
LRIATLHSKITAAQTEKEMLKFEAGEYDLLLSTSIIESGIHMPKVNTMIVDGADRFGMAD
LHQLRGRVGRGKVEGYCYFLVENKDALTDQAKRRLIALESNSFLGSGAVLAYHDLEIRGG
GNLIGESQSGHIKQIGYALYLKMLEDAIRILSQEAAPERKSVDIKLSITAYISDELVPHE
RVRLELYRRLSACSEPHDVIEIEQEIEDRFGKPDLPTRQFLDLVTIKVLALKKGVERIGN
YNENITIQYNDENKTVVKARSRDDDDLIASVLEALRSKAT
NT seq
3003 nt
NT seq
+upstream
nt +downstream
nt
atgatcgaagccaatctctacgactatttcgaaaaaagcaaagccccgcagatcctgctg
gtcgagaacgacaaagaggcgcagaccgccgcgacggtcgccacgctgcacggcatcgaa
tccgtcgtactcccggattttcgtgccacctacggcgaagacctcagaagctggcgggaa
gagctctttgcattgaacgatgccctgaaacgctattacgaaaaaatcatccaaaatcca
aaatccaaaatccaaaatcccatcctgatcgccccgtaccacacccttctctatcccctg
ccgaagccggagctgatgcaaaccttctctctcgcgttcggcgacgatctcgatctcgaa
gcgctcaaagagaagctctacgcatggggttacagcttcgtcgacgtcgtcgagacgaaa
ggggaggtatcgatccgcggggatatcgtcgatatcttttcccccggaagcgaaaagccg
tggcgcatcagcctgttcgacaccgaagtggagagtatccggacgttcgaagtggagagc
cagaagtccaacaaagaagaagagctcgaagaggttgtcgtggagccggcactcttttcc
ctgacgaagccggcgttcgaagcgctgcaaaaacgggtggagctgagcgacagcgacgtt
ttcgtcaaggatgtggcctctttggggctctggtttctggaggatctcgcgcacgatctg
atggcggggaagatggcggtcgcggtaaaagatctcgccgacgaggtggcgttcgcctac
gaacatgccaaaaacgcccttcccaaagcgcgtttcgacgtcgaagtcgttcccgaaacg
ggccgtgtcaaagcgatcgaaccgatcaatgtcgacctgctgaccgaaaactaccccgag
agggaacttgtcatcgtcgccgccagcgaagcgctcgtgcgccgaagcccgatcaaggag
ctggcacgcgcgacgatcgtcaaagccgagggggccgtcaatcttctgacgcccgaaaag
atcatcgtttcgctcaacaaaccgttcaagaaacgcgccgtcaagcgcccgacgattctg
ctcgacgacctgaagccgggcgactacgtcgtgcatgaaaactacggtgtcggcatcttc
aaagggatcgaaccgcaccaggtgctcggcgccgtgcgcgacttcgtccacatcgcctac
cagaacgacgacacgctgcttctaccggtcgaaaacctcgacatgatcgaccgctacatc
gccgaaggcggttcgctgccggccctcgaccggctcggaaaggggggcttcggaaagctc
aaagcgaaagtcaaagagcgcctcttcgcgattgcgagcgagatcgtcaacatgtcggcg
aagcggatgctgataaaaggggcggtgatcgataccgatatcccggaactgttcgagttc
cgcgaggcgtcgggcttcgagtacacacccgaccagatcacggcggtggaggagattttc
gccgatctctccagcggccgcgtcatggacagactgctcagcggcgacgtcggtttcgga
aagaccgaagtggcgatgaacgcgattctcgccgtcgccaagtcgggttaccagagtgcg
ttcgtcgtgccgacgacactgctgagcgcacaacacttcaagagtgtcgaggccaggctc
gcacccttcggcgtgcgtatcgacaagctcgaccgtttcacgacggcgaaacggaaacgg
cagatcctcgaagagctggagaagggggaactcgatctcgtcgtcggcacccatgcgctg
ctcggggcgaagttcaagaacctggggcttgtcatcatcgacgaagagcacaagttcggc
gtgaagcagaaagaggcgctcaaacttctcagcgaaaacgtccatcttctcagtatgagc
gccacgccgattccgcgaagcctcaacatggcactctccaaaatcaaagggtacagcgag
ttgcgcacgccgcccgtggagcgcaaaggggtgcgtaccttcgtcaagagtttcgacgag
acggtcgtcaaagaggcgatcatgcgcgaactccggcgcggcggacagctcttctatgtc
tacaactcgatcgccggcatcgagagcaagaagagcgagcttctggagattcttcccggc
cttcgtatcgcgacgctccattcgaaaatcacggcggcgcagaccgaaaaggagatgctg
aagttcgaggcgggcgagtacgacctgctgctttccacctccatcatcgagtcgggtatc
catatgcccaaagtcaacacgatgatcgtcgacggcgccgaccgtttcgggatggcggac
ctgcatcagctgcgcggccgtgtcgggcggggcaaagtcgaggggtactgctactttctc
gtcgaaaacaaggatgccctcaccgaccaggccaaacggcggctcatcgcactggagagc
aactccttcctcggaagcggtgccgtgctcgcctaccacgacctggagatccgcggcggc
ggcaacctgatcggcgagagccagagcgggcacatcaagcagatcggttatgcgctctac
ctgaagatgctcgaggacgcgatccgtattttgagccaggaggcggcgccggaacgcaag
agtgtcgatatcaaactctccatcaccgcctatatttccgacgagttggtgccgcacgag
cgggtccgcttggagctctaccggcgtctgagcgcctgcagcgagccccacgacgtcatc
gagatcgagcaggagatcgaagaccgcttcggcaaacccgatcttccgacacgccagttc
ctcgatctcgtcacgatcaaggtactcgccctcaaaaagggtgtcgagcggatcggcaat
tacaacgaaaatatcacaatacagtataatgatgagaacaaaacggtggtcaaagcgcgc
agcagggacgatgacgacctgatcgcgagcgtgctggaggcactgaggagcaaagcgaca
tga
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