Hydrogenimonas cancrithermarum: HCR_18370
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Entry
HCR_18370 CDS
T09533
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
hcj
Hydrogenimonas cancrithermarum
Pathway
hcj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hcj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HCR_18370 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hcj03019
]
HCR_18370 (pnp)
03016 Transfer RNA biogenesis [BR:
hcj03016
]
HCR_18370 (pnp)
Enzymes [BR:
hcj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
HCR_18370 (pnp)
Messenger RNA biogenesis [BR:
hcj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HCR_18370 (pnp)
Transfer RNA biogenesis [BR:
hcj03016
]
Prokaryotic type
tRNA degradation factors
HCR_18370 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
BDY13525
UniProt:
A0ABM8FMD1
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All DBs
Position
1815195..1817396
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AA seq
733 aa
AA seq
DB search
MACRFEFEMNNRQTVYETGKIARQANGSVVLRSGKTVLLATAVMDDKPVEEHFLPLTVQY
IEKSYAAGKIPGGFVKRETKPGDFETLTSRLIDRSLRPLFPKGFYNPVQITVMLLSVDEN
ADLQSLALDAASAALFMSDIPVERCVSGVRIGRKEGEFVLNPSLEELEEGTLDLFVSGTK
EDLLMIEMRAIGTVDVEIEPTVAIDPMMDPMLADEIVQIPHVNELKEEELVEAIALAKQA
ITLAAGEYERVFAEAAKPKKAVELFEERADPSIVTYIKEFYMEEINRALDGMAKSERGGE
IKALVAKVLEDETAQAEGWSEDQIKAAVGEVKRERVRAMILEEGKRADGRGLRDVRPISI
ETNLLPSVHGSCLFTRGETQALVTCTLGNRQDAQMFERITGKSASYEEFMVHYNFPGFSV
GEASRIGPPGRRELGHGNLAKRALEPALDKTQLDMIIRLVSEILESNGSSSMATVCGGSL
ALKAADVPVLKLIAGVAMGLVTENDKYAILTDIMGLEDHDGDMDFKVAGSEDGITALQMD
IKLGGVSLDLLKEALDQAKEARLHILGIMEEAAKKIEVNEEVLPSTEIFHIEPHKIVDII
GQAGKTIREIIEKFEVNIDLDKKQGEVKVTGPSKAKVKAACDHIRSIAEGSAKKELPQFE
IDKPIKGKVKKIVDFGAFVELPGGVDGLLHISKISRGRIGHPSDLLHEGQEIEVVVKSQK
GHKIELALSKPID
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atggcatgcagattcgaatttgaaatgaacaaccgtcaaacggtatacgagacgggaaaa
atagcgcgtcaggcgaatggttcggttgtgctgcgcagcggaaagaccgttttgctcgcg
accgccgtgatggacgacaagccggtagaggagcactttctgcctctgacggtgcagtac
atcgagaagagttacgcagccgggaagattccgggtggattcgtcaagcgagaaacgaaa
cccggagacttcgagacgctgacgtcgcgtctgatcgaccgttctctcaggccgcttttc
cccaaagggttctacaatccggtacagatcacggtcatgttgctcagtgtcgatgaaaat
gccgatctgcagtcgcttgcactcgatgcggcatcggcggccctgttcatgtcggatatc
cctgtggagcggtgtgtctccggtgtgcgtatcgggcgtaaagagggggagttcgttctg
aacccttcattggaggagctggaagaggggacgctggacctctttgtttccggaacgaaa
gaggatcttctgatgatcgagatgcgggccatcgggaccgtcgacgtcgaaatcgaaccg
accgtcgccatcgatccgatgatggacccgatgctggcggacgagattgtccagattcct
catgtcaacgagctcaaagaggaggagctggtcgaagcgatcgcactggccaaacaagcg
attacgctagcggcgggcgagtacgagcgagtcttcgccgaagcggccaaaccgaaaaaa
gcggtcgaactcttcgaagagagagccgatccttccattgtaacctatatcaaagagttc
tatatggaagagatcaaccgtgcactcgacggtatggccaaaagcgaacgcggcggtgag
atcaaggcactggtcgcaaaagttttggaagacgagacggcccaggccgaagggtggagc
gaagatcaaatcaaagccgcagtgggtgaagtcaaacgcgagcgtgttcgggcgatgatc
ctggaggagggaaaacgtgccgacggccgcggcctgcgggatgtgcgtccgatatccatc
gagaccaacctgcttccgagcgttcacggctcatgcctctttacacgaggcgaaacacag
gccctcgtcacctgtaccctcggaaaccgtcaggatgcgcagatgttcgagcgcattacg
ggcaaaagtgccagttacgaagagttcatggttcactacaattttcccggtttcagtgta
ggcgaagcctcccgtatcggacctccgggccgacgcgagctcggccacggcaacctggcc
aaacgcgcactcgagccggcgctcgacaagacgcagctcgatatgatcattcgtctggta
tcggagattctcgaatcgaacggatcgtcttcgatggcgacggtctgcggcggttcgctc
gcgctcaaagccgctgacgttccggtgctgaaactgattgccggtgttgcgatgggtttg
gtgaccgaaaacgacaaatacgccattctcaccgatatcatggggcttgaagaccatgac
ggcgatatggatttcaaagtggcgggaagcgaagatggcatcacagccctgcagatggat
atcaagctcggcggtgtcagcctcgatcttctgaaagaggcgctcgaccaggcgaaagag
gcacgtctgcatatcctcggcatcatggaagaggcggccaaaaagatagaagtcaatgaa
gaggtgcttccgagtaccgagattttccatatcgagccacacaaaatcgtcgacatcatc
ggtcaggcgggcaagacgattcgtgaaataatcgaaaagttcgaagtcaacatcgacctc
gacaaaaaacagggcgaagtgaaggtgacggggccgagcaaggcgaaagtgaaggccgcg
tgcgaccatatacgttccattgccgagggctcggcgaaaaaagagcttccgcagttcgag
atcgataagccgatcaaagggaaagtgaaaaaaatcgtcgacttcggtgctttcgtcgaa
ctgcctggcggcgtggacggccttcttcacatctccaaaatttcacgcggacgcatcggc
catccaagcgatctgctgcatgaagggcaggagatcgaagtggtcgtcaagtctcaaaaa
ggccataaaatcgaactggcactgtcgaaaccgatcgattaa
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