Hydrogenimonas cancrithermarum: HCR_20190
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Entry
HCR_20190 CDS
T09533
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
hcj
Hydrogenimonas cancrithermarum
Pathway
hcj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hcj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HCR_20190 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hcj03019
]
HCR_20190 (recQ)
03400 DNA repair and recombination proteins [BR:
hcj03400
]
HCR_20190 (recQ)
Enzymes [BR:
hcj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HCR_20190 (recQ)
Messenger RNA biogenesis [BR:
hcj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HCR_20190 (recQ)
DNA repair and recombination proteins [BR:
hcj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HCR_20190 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
BDY13707
LinkDB
All DBs
Position
2003557..2005380
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AA seq
607 aa
AA seq
DB search
MSNKTVDVLKEIFGHTGFRPLQKEAVDTTLQNRDLLMILPTGGGKSLCYQLPALLKKGVT
VVVSPLLALMHDQVRALKMQGIAAEMIGSMQTPQEIGEIVTRLRNGELKLLYVAPERFSA
YGFLDLLKSIPIASFVIDEAHCVSEWGHEFREDYRRLHLLKEQFPNVPVSAFTATATSQV
EADIVRQLGLKSPVRLRGSVYRENLLVRAEPRIGDGKRQLSEFLERFEGESGIVYTFTRN
SAETVAAYLQKSGIKAMAYHAGLPKEERQAAYRAFVHDEAAVIVATVAFGMGIDKSNIRY
VVHMSMPKTLENYYQEIGRAGRDGLPSETLLLYSAADAAQRASLIEGLEEGGYRQSAFDK
LEKMVGYCRSESCRHLQLADYFGESMDACGTKCDNCTAPTHEQRDITIEARKLLSAIYRT
SQRFGKNHIIELLRGSENRKILQFGHERLSVYGIGKELTKAQWEVVTERLQELGALARGE
HRNFTITEIGAEILKGGASVSIKASRLDVQEKRKRTQKADMGETGDFDREIFDELRRVRK
AIADENQVPAYIVFGDKTLKEMAAKLPRTKEQMLEISGIGEVKFSRFGEPFLERCRELAE
RVPVQEA
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
ttgtcgaataaaacggttgacgtgttaaaagagattttcggacataccgggtttcggcct
ctgcagaaagaggcggtcgatacgacgctgcaaaaccgagatctgctgatgatccttccc
actggcggcggcaagtcgctctgctatcagcttcccgcacttctcaagaagggggtgaca
gtggtcgtctctccgcttctggcactgatgcacgaccaggtgcgtgcattgaaaatgcaa
ggcatcgctgcggagatgatcggctcgatgcagacgccgcaagagatcggcgagatcgtc
acacgacttcgtaacggtgaactgaaacttctctacgtggcgcccgagcgtttttcggcc
tacgggtttctggatcttctcaaatcgatccccatcgcgtcgtttgtcatcgacgaagcg
cactgtgtgagtgagtggggtcacgaatttcgcgaagattaccggcgtctgcatctgctc
aaggagcagttcccgaacgttcccgtctccgcattcaccgcgacggcgacatctcaggta
gaggcggacatcgtccgccagctcgggctgaagagtcccgtgcggcttcgcggatcggtc
taccgggagaatcttctggtgcgtgccgaaccgcgcattggcgatgggaagcgtcagctg
tcggagtttctggagcgttttgaaggtgaaagcggcattgtctacacctttacccgcaac
agtgccgaaacagtggcggcctatcttcaaaaaagcggcatcaaagcgatggcctaccat
gcaggtttgccaaaagaggagcgtcaggcggcgtatcgtgcctttgtccacgacgaagcc
gccgtcatcgtggcgactgtggcatttggcatgggaatcgacaaatcgaatatccgttac
gtcgtccatatgagtatgcccaagacgcttgaaaactactaccaggagatcggccgggcg
gggcgtgacggactgccgagcgaaacactattgctctatagcgccgccgatgccgcgcag
cgcgcctcgttgatcgaaggactggaagagggaggctacaggcagagcgctttcgataaa
ctcgaaaagatggtcggctactgccgcagcgagtcgtgccgtcacctgcagctggccgat
tatttcggcgaatcgatggatgcgtgtggtacgaagtgcgacaactgtacggcaccaacg
cacgaacagcgcgacatcacgatcgaagcgcgtaaacttctttccgcgatctaccggact
tcccagcggtttgggaaaaaccacatcatagagctgctgcgcgggagcgaaaaccggaag
atacttcaattcgggcacgagcgcctttctgtctatgggatcggcaaggagctgacgaag
gcgcaatgggaggtcgtgacggagcggcttcaggagcttggtgcgcttgcacggggcgaa
caccgaaacttcacgatcaccgaaatcggggcagagattctcaaggggggcgcatcggtt
tcgatcaaggcgtcgcgtttggacgtgcaggagaagagaaaacggacgcaaaaggcggat
atgggggaaacgggcgatttcgatcgtgaaattttcgatgaattgcgcagagtacgcaaa
gcgatcgcagacgagaaccaggtgcccgcctatatcgtctttggcgataaaacgcttaaa
gagatggcagcaaagctcccgcgaacgaaagaacagatgttggagataagcggtatcgga
gaggtgaagttttcccgtttcggagagccatttttggagcgttgccgcgaacttgccgag
cgggtgcccgtgcaggaagcgtaa
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