Hydrogenimonas cancrithermarum: HCR_23220
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Entry
HCR_23220 CDS
T09533
Symbol
sbcC
Name
(GenBank) nuclease SbcCD subunit C
KO
K03546
DNA repair protein SbcC/Rad50
Organism
hcj
Hydrogenimonas cancrithermarum
Brite
KEGG Orthology (KO) [BR:
hcj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hcj03400
]
HCR_23220 (sbcC)
DNA repair and recombination proteins [BR:
hcj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HCR_23220 (sbcC)
Archaeal homologous recombinant proteins
HCR_23220 (sbcC)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_29
BRE1
AAA_21
ABC_tran
SMC_N
AAA_16
Motif
Other DBs
NCBI-ProteinID:
BDY14009
LinkDB
All DBs
Position
pISO32_1:46001..49630
Genome browser
AA seq
1209 aa
AA seq
DB search
MKILRLRSRNINSLKGENEIDFVSFLNGSSLFAITGETGSGKTTLLDVITCALYGRTARL
SKGSEVQELMSRGTGEAMCEVEFEVKGKHYRSSWTLRRARGKPDGNFQSAKMELVSLPNE
EIIEAKASKVPKKIEALTGLDFDRFTQSMMLAQGGFDAFLKAEEKERSKLLEKITGTKIY
SEISKIVFERAREGREVIKLIETELGAIGCLPEEESRELEKMLTEKNEEEKRQKVLVERA
QKVYEIKHTFVSLQKDMETYTKDEATAQQEIERSKTLFEKLTLSDKALSVSAVYERKKEM
ERSLEESTDKLKSLKEEVATLTQKKRTLEAERAKMEALRTQGKADYETLSAKIQKARELQ
SRLDETRKQIVEKERDITKKEGELAATRAKLDALTEKEAKLKDDIGSCEAYRNGHRADRT
LVSDIEIIATLLESHRNDLRQIEEITKRIDETKTKQTDTLTALSAADEQLKQRKTEADEA
ARLYEEADRHVKSLEAQEERLQQSKRTQEAILARLESFGSDTKLLEQERENYKHHMASMQ
SLTVQKDALNGKIETMREHLQTLQTTKEKELLIQKYEKDRKRLQEGEACFLCGSTEQPYI
EHSDALTASETDDRIFSLQRQLTEEESRLTELERKLGIEETQANSAQLEYQKIEARIAEH
ESFFKAHDVVVSEESEANVRESMEAAASKLSRLTGLRTKRDALLAEKEKKREAYLDAERV
TGTLRNDLSRLERDLEHDKENLKKHQQSLGKHEEKLNGYWNIYGLSFEISTLMTHYTQLK
QRKAAYERNEKALQESTEQYNKIKLEIGTHTSTIKSEERTLDTMRKEFKTLRERAMLIEQ
AKKEVLDVEDIEAYTASVEKKWQEIQQAFNALSNDFHVTTAALLDRELIFKTTSEAHLKK
QEESEKLTEGFNSEMKKKGFESEQMLEDALLPEAEREALRSTCEALNSKLTEAMTRKRDT
EAKLTALQDKDISDKTLEVLLEEKRKQEELYGALREALGKIKSRLDTDAQNRQRHKAKLE
ELADHRESQQVWEKLNELIGASDGAKFAKFAQGITLDQLIYLANKHLAFLSDRYAIVRLR
EEGQQLEIAVIDKYQGDEIRPSNTLSGGESFLVSLSLALGLSELASQKISIDSLFLDEGF
GTLDTDTLDIALNALNMLESRGKMVGVISHVETMKERIPLQIKIHKSGGGESRVELVGQT
SPSLIRQEF
NT seq
3630 nt
NT seq
+upstream
nt +downstream
nt
atgaagattttgcgattgagatcaagaaacatcaattcactcaagggagagaacgagata
gacttcgtatcgtttctcaacggaagctccctctttgccattacgggtgagacaggctcg
ggcaagacgaccctgctcgatgtaatcacctgtgcactctatggacgtaccgcaagactc
tccaagggttcggaagtgcaagagctcatgtcaagaggtacgggtgaggcgatgtgcgaa
gtggaattcgaggtcaagggaaaacactaccgatcctcttggacactgcgtagagcgaga
ggaaagccggacgggaactttcaatctgccaaaatggagcttgtctcccttcccaatgaa
gagatcatcgaagccaaagcgagcaaagtgcctaaaaagatcgaagcgcttaccgggctt
gacttcgaccgctttacccagtctatgatgctggcacagggtgggttcgacgctttcttg
aaagcggaagagaaagagcgctccaaactgttggagaagatcactggaacgaagatatac
agcgagatatccaaaatcgtctttgaacgcgccagagagggtcgcgaagtgatcaagctg
atagagaccgagcttggcgcaatcgggtgtctgcccgaagaggagagtcgagagcttgaa
aagatgcttacggaaaaaaacgaagaggaaaagagacagaaagtgcttgtggaacgcgcc
caaaaagtctatgagataaaacacacgttcgtttctttgcaaaaagacatggagacctat
accaaagacgaagcgacagcgcaacaagagatagaacgcagcaaaactctctttgaaaag
ttgacactttcggacaaagcactatctgtcagtgccgtctatgagcgtaaaaaagagatg
gagcgttccctcgaggagagcactgacaaattgaagtcgctcaaggaagaggtcgcgaca
cttacgcaaaagaagcggacgcttgaagcggagagagcgaagatggaagcgctccgtacc
caaggcaaagcggactacgaaaccctaagcgcaaagatacaaaaagccagagagttgcaa
agcaggttggatgagacccgtaagcagatcgtggagaaagagcgcgatatcaccaaaaaa
gagggagaactcgcagccaccagagccaaactcgacgcactcacagagaaggaggcaaaa
ctcaaagatgatatagggagttgcgaggcatatagaaacggtcatcgagcagaccgcaca
ctggtgtcggatatcgagatcatagcgacactgcttgaaagccaccggaacgatctaaga
cagatagaggaaatcacgaagcgcatagacgagaccaaaacgaaacagactgacacccta
acggcgctttccgctgcggatgaacagttgaaacaacgcaaaacggaagcagatgaggcg
gcacgactctatgaagaagccgataggcacgtcaaaagtctcgaagcgcaggaagagcga
ctacaacagtcgaaaagaacgcaggaagcgatcttggctcggcttgaatcgttcggaagc
gataccaaactgcttgagcaggagcgtgagaactataagcatcatatggcatccatgcag
tctcttacggtacaaaaagatgccttgaacggcaagatcgagaccatgcgagagcatctt
caaaccctccaaaccacgaaagaaaaagagctgctgatccaaaagtacgaaaaggatcgc
aaaagacttcaagagggggaggcgtgtttcctctgtggttcgaccgaacagccttatatc
gaacacagcgatgcgcttaccgcctccgaaacggacgatagaatcttctcgttgcagcga
caacttaccgaagaagaatcgcgtctgaccgaacttgaaagaaaactcggcatagaggag
acacaagcgaatagcgcacagcttgaatatcaaaagatcgaggcgagaattgccgagcac
gaaagcttctttaaagcacacgacgtagtggtatcggaagagagcgaagcgaacgtgcgg
gagagcatggaggcggcagcctctaaattatcccgactaaccggcttacgcactaaacgg
gatgccctgcttgcagaaaaagagaagaagcgcgaagcctatctcgatgcagaaagggta
acaggcacgctcaggaacgacctttcccgtcttgagcgcgacctcgaacacgacaaagag
aacttgaaaaagcaccagcaaagcctcggtaagcacgaggaaaaacttaacggatattgg
aacatttacgggctgtcgttcgagatctccacacttatgacacactatacgcagctcaag
cagaggaaagccgcctacgagcgcaacgaaaaagcgcttcaagagagtacagagcaatac
aacaagataaaacttgagatcggtacgcatacaagtaccataaagagcgaagagcgaaca
ctcgacactatgcgaaaggaattcaaaacactccgggaacgagcgatgttgatcgaacag
gcgaaaaaagaggtattggacgtagaagatatagaagcctacaccgcatcggtcgaaaag
aagtggcaggaaattcaacaggctttcaatgccttatcgaacgatttccatgtgacgacg
gctgcgctgcttgatagagaactaatcttcaagacaacgagcgaagcgcatctcaagaag
caggaagagagtgaaaagcttaccgaaggatttaattccgagatgaaaaaaaagggtttc
gagagcgaacagatgttggaagatgccctgcttcccgaagcggaaagggaggcgctgcgg
tcaacctgtgaggcgttaaactccaagcttacagaggcgatgaccagaaaacgcgatacc
gaggcaaaactcaccgcactccaagataaggatatttccgacaaaacgctcgaggtgcta
ctggaagagaagcgtaagcaggaagagctttacggcgcactccgggaagcgctcgggaag
ataaagagccgactcgacacagatgcgcaaaatagacagagacataaagcgaagttggaa
gagcttgccgatcaccgtgagtctcaacaggtgtgggagaaactcaacgagcttatcggc
gcttctgacggagcgaagtttgccaaattcgcccaaggtatcacccttgatcagttgatt
tatcttgcgaacaagcatttggcgttcctctcggatagatacgccatcgtcagactccga
gaggaagggcagcagctcgagatcgcagtgatcgacaaatatcagggggatgagatacgt
ccgtccaacaccctttccggtggagaaagcttccttgtgagcctctcgctcgctcttggg
ctctccgaactggcgagccaaaagatatccatcgactccctcttcctcgatgaaggcttc
ggaacgctcgacaccgatacgctcgatatcgcactgaatgcactcaatatgcttgagagc
agagggaagatggtaggggtaatctctcacgtcgagacgatgaaagagcgtattccacta
cagatcaagatacacaaaagtggtggcggggagagtcgagtagaattggtggggcagact
tcaccttcattgataaggcaagaattttaa
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integrated database retrieval system
