KEGG   Halomonas cupida: MRB56_05165
Entry
MRB56_05165       CDS       T11149                                 
Name
(GenBank) 3'-5' exonuclease
  KO
K02342  DNA polymerase III subunit epsilon [EC:2.7.7.7]
Organism
hck  Halomonas cupida
Pathway
hck03030  DNA replication
hck03430  Mismatch repair
hck03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:hck00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    MRB56_05165
   03430 Mismatch repair
    MRB56_05165
   03440 Homologous recombination
    MRB56_05165
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hck03032]
    MRB56_05165
   03400 DNA repair and recombination proteins [BR:hck03400]
    MRB56_05165
Enzymes [BR:hck01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     MRB56_05165
DNA replication proteins [BR:hck03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     MRB56_05165
DNA repair and recombination proteins [BR:hck03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     MRB56_05165
SSDB
Motif
Pfam: RNase_T Rv2179c-like RNase_H_2
Other DBs
NCBI-ProteinID: XNS35465
LinkDB
Position
1125170..1125892
AA seq 240 aa
MPLIRPKTRSASDWHDYLVQRRQQTQVSALEDFFAGADLSPILPIEEAPMMALDLETTGL
DPKRSEIVSIGMVPFSLSRIRVSERRYWVVRPRRSLDARSVTFHHITHADIEGAPRLDEV
LEDVMRAMAGHLLVVHYRHIERAFLDAATRKAWRESVSFPVIDTMSLEARIHRQSWLARL
RRWSGRPPASIRLHDSRTRYGLPHYHGHHALNDALATAELLQAQVASHYAPETPIGMLWS
NT seq 723 nt   +upstreamnt  +downstreamnt
atgccgctgattcgcccgaagacacgctctgcttccgactggcacgattatctcgtccaa
cggcgtcagcagacacaggtctcggcgctggaggatttctttgccggtgctgatctatcg
cccattctgcccatcgaggaagcgcccatgatggcgctggacctggagactaccggactt
gacccgaagcgtagcgagattgtgtcgatcggcatggtgccgttctcgctgtcgcggatt
cgagtttccgagcggcgctattgggtggtgcggccacgacgcagcctggacgctagatcg
gtgacctttcaccacatcacccatgccgatatcgaaggggcgccgcgcctcgacgaggtg
ctcgaggatgtcatgcgcgccatggccggacacctgttggtggtgcattatcgccatatc
gaaagggcctttctcgatgcggcaacccggaaggcctggcgggagtcggtgagcttcccg
gtgatcgacaccatgtcactggaagcccgtatccaccgtcaatcctggctggcgcgcctg
aggcgctggtcaggacggccaccagcgtcaattcgtctccacgatagccgtacccgctat
ggcctaccgcactatcatggccaccatgcgctcaacgatgctctggcgacggcggaactg
ctgcaggcccaggtggccagccattatgccccggaaacaccgatcgggatgctgtggagc
tga

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