Halomonas cupida: MRB56_06565
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Entry
MRB56_06565 CDS
T11149
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hck Halomonas cupida
Pathway
hck03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hck00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MRB56_06565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hck03019
]
MRB56_06565
03009 Ribosome biogenesis [BR:
hck03009
]
MRB56_06565
Enzymes [BR:
hck01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MRB56_06565
Messenger RNA biogenesis [BR:
hck03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MRB56_06565
Ribosome biogenesis [BR:
hck03009
]
Prokaryotic type
rRNA helicases
MRB56_06565
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_dimer
CMS1
AAA_30
HEM4
Motif
Other DBs
NCBI-ProteinID:
XNS35729
LinkDB
All DBs
Position
1467189..1468931
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AA seq
580 aa
AA seq
DB search
MTSTTVASPSFGDLALLPAVLSAIETLGYETPSPIQAQTIPALLEGRDMLGQAQTGTGKT
AAFALPLLSRLEISRREPQVLVLAPTRELAQQVAVSFSRYGQNLSGLEVATLCGGQEYRE
QLSALRRGAQVVVGTPGRVIDHLDRGSLKLNGLRSLVLDEADEMLRMGFIDDVKRVVADT
PDDTQRVFFSATLPTEIERIVNKYLLDPVKVAIEARTTTAEGIEQRLVRVDGGAKLEALA
RIIEVEPVDAAIVFVRTRAACTTLMEQLSARGVNVASLSGDLDQSLRERTITRLKRGKID
VLIATDVAARGLDVPRITHVINYDLPQDAEAYTHRIGRTGRAGRTGIAITFAGFREGRKV
GWLEQATGQKMAVMELPDEAAIRGHRDEVFHHRVVASLTRGAEEQRALVERLVEEGHDPV
ELACAFASMARADEPPIGRLQAPRRERNDRNERGGSRDRDGRAPRRRDDRTPSVGMTRYR
VSVGHKDGVKPGQLVGALANEGGIEGSRIGRIDIRNAFSVVELPNGLPESIIAKMSRARV
AGRPLDISEDRGGDRGSSDRAPRRRRDEDGAAPVRRQSRA
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atgacctctacgactgtcgcctcaccgtctttcggtgatctggccctgctgcctgctgtt
ctctccgccatcgagactctgggctatgaaaccccatcgcccattcaggcacagaccatt
ccagcgctgctggaaggccgcgacatgctgggccaggctcaaactggtaccggcaagaca
gccgcattcgctctgcctctgctgtcacgtctggaaatcagccgtcgtgagccccaggtt
ctggtgctggctccgactcgtgaactggcgcaacaggttgcggtttccttttctcgttat
ggccagaacctttccggtctggaagtcgctaccctgtgcggcggccaggaatatcgtgag
cagctgagtgcgctgcgtcgtggtgctcaggtcgtggttggtacgccgggccgtgtgatc
gatcacctcgatcgcggcagcctcaagctcaatggtctccgctcgttggtgctggacgag
gctgacgagatgttgcgcatgggcttcatcgatgacgtcaagcgcgtggtcgccgatact
cctgacgacactcagcgcgtgttcttctcggcgactctgccgacggaaatcgagcgcatc
gtcaacaagtacctgcttgatccggtcaaagtggccatcgaagcacgcactactaccgct
gaaggcattgaacagcgcctggtgcgcgttgacggtggcgccaagctggaagcgctggcg
cgtatcatcgaagtcgagccggtggacgccgccatcgtcttcgtgcgtactcgtgccgcc
tgtaccactctgatggagcagctttccgcgcgaggcgtcaatgttgccagcctgtctggt
gaccttgatcagagtctgcgtgagcgcaccattacccgcctcaagcgtggcaagatcgat
gtgctgatcgccaccgacgttgctgcccgtggtctggacgttccgcgtatcacccacgtc
atcaactacgacctgccgcaggatgccgaggcctatacccaccgcatcggccgtactggc
cgtgccggtcgtaccggtatcgccatcacctttgccggcttccgcgaaggccgcaaggtc
ggttggttggagcaggcgactggccagaagatggccgtcatggaactgccggacgaggca
gcgatccgtggccatcgtgacgaggtcttccatcaccgcgtggtggcatccctgacccgt
ggtgccgaagagcagcgtgcgctggtcgagcgtctggttgaggaaggccacgatccggtc
gagctggcctgtgcattcgcttccatggcacgtgccgacgagccgcccatcgggcgtctg
caggcaccgcgtcgtgagcgtaatgatcgcaatgagcgtggtggtagccgtgatcgtgat
ggccgtgcgccgcgtcgtcgtgacgaccgtactcccagcgtcggcatgacccgttatcgc
gtgtcggtcggccacaaggatggcgtcaagccgggccaactggtcggtgctctggccaat
gaaggtggcatcgagggttcgcgtatcggtcgtatcgatatccgcaatgccttctcggtg
gtcgagctgcccaacggtctgccggaaagcatcatcgccaagatgtcccgggcccgcgtt
gccggtcgtcctctcgacatcagcgaggatcgtggtggtgatcgtggcagcagtgatcgc
gctccgcgtcgtcgtcgtgacgaggatggtgccgctccggtacgtcgtcagtcacgcgcc
tga
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