Halomonas cupida: MRB56_12330
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Entry
MRB56_12330 CDS
T11149
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
hck Halomonas cupida
Pathway
hck03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hck00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MRB56_12330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hck03019
]
MRB56_12330
Enzymes [BR:
hck01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MRB56_12330
Messenger RNA biogenesis [BR:
hck03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MRB56_12330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
AAA_19
ResIII
P-loop_SecA
AAA_22
HI1480
Cas3-like_C_2
UTP25_NTPase-like
Motif
Other DBs
NCBI-ProteinID:
XNS32288
LinkDB
All DBs
Position
2741896..2743302
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AA seq
468 aa
AA seq
DB search
MSFSDLGLRAELLSAIEAQGYQTPTPIQRQAIPLVLEGRDLLASAQTGTGKTAGFTLPML
QRLSGGQRPRARQVRALVLTPTRELAAQVGESVREYGQHLALTSHVIFGGVGQQPQVDAL
RPGLDILVATPGRLLDLHQQRHVDLSRIEILVLDEADRMLDMGFIHDIRRVLKLLPEKRQ
NLLFSATFSNDIQKLAEGLLDNPAKVEVARRNTTAEKVDQAVYRVDRERKRELLSHLISS
QQWYQVLVFTRTKHGANRLAEHLGKHDIPAMAIHGNKSQSARTRALDAFKSGQLQVLVAT
DIAARGLDIDQLPHVVNFELPNVAEDYVHRIGRTGRAGKEGQAVSLVCVDEHGLLKNIER
LIKRDLDKRIEPGFEPDPNARPEPIENGRGRGGGGRGRSQGGARSQGGGGRSQGGRAADG
ASRKSENRGNSDNRGNRANDSNRGNGGNSDATAPRRRRRRSGSSSRQA
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgagtttttccgatctcggcctgcgtgccgaattgcttagtgccatcgaggcacaaggt
taccaaacccccacccccatccagcgccaggcgattcccctcgtccttgaaggacgcgat
ctgctggccagtgcccagaccggtactggcaagacggcgggctttactcttcccatgctg
caacgcctgagcggcggccagcgcccgcgtgctcgccaggttcgcgccctggtactgaca
cccactcgcgagcttgccgcccaggtcggcgagagcgtacgcgagtacggccaacacctt
gcccttaccagccatgtcatcttcggcggtgtgggccagcagccgcaggtcgatgccctg
cgccccggcctcgacattctcgttgccacccctggacgcctgctcgatctgcatcagcag
cgccacgtcgacctcagccgcatcgagattctggtgctcgatgaagccgatcgaatgctc
gacatgggcttcatccatgacattcgtcgcgttctcaagttgctgccggagaaacgccag
aacctgctgttctcggcaaccttctccaacgatatccagaagcttgccgaaggcctgctc
gacaaccccgcgaaggtggaagtggcgcgccgcaacaccaccgccgagaaggtcgaccaa
gcggtgtatcgcgtcgatcgcgaacgcaagcgcgaactgctgtcgcacctgatcagctcg
cagcagtggtaccaggtgctggtgttcacccgcaccaagcatggcgccaaccgtctcgcc
gagcacctcggcaagcatgacattccggccatggcaattcatggcaacaagagccaatcg
gcacgtacccgggcgctggacgccttcaaatccgggcaactgcaggttctggtggccacc
gatatcgccgcgcgcgggctggacatcgatcaactgcctcacgtggtcaacttcgagctg
cccaacgttgccgaggattacgtccaccgcattggtcgtaccggccgtgccggcaaggaa
ggccaggcggtatcactggtctgcgtcgacgaacatggcctgctcaagaatatcgagcga
ctgatcaagcgtgacctggacaaacgcatcgagcccggctttgagcctgacccgaatgcg
cgccccgagcccatcgaaaatggccgaggccgtggtggcggtgggcgtgggcgttcccag
ggcggtgcgcgttcacaaggtggtggcggccgctcccaaggtggtcgcgctgcagatggt
gcctctcgcaagagtgaaaaccggggcaacagtgataaccgcggcaaccgtgccaacgac
agcaatcggggcaacggcggcaacagcgatgccactgctcctcgtcgtcgccggcgtcgc
agcggttcgagttcacgccaggcgtaa
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