Halomonas cupida: MRB56_14140
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Entry
MRB56_14140 CDS
T11149
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
hck Halomonas cupida
Pathway
hck03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hck00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MRB56_14140 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hck03019
]
MRB56_14140 (rne)
03009 Ribosome biogenesis [BR:
hck03009
]
MRB56_14140 (rne)
Enzymes [BR:
hck01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
MRB56_14140 (rne)
Messenger RNA biogenesis [BR:
hck03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MRB56_14140 (rne)
Ribosome biogenesis [BR:
hck03009
]
Prokaryotic type
rRNA processing factors
MRB56_14140 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
XNS32631
LinkDB
All DBs
Position
3137469..3140600
Genome browser
AA seq
1043 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYRGKITRVEPSLEAAFVDF
GAERHGFLPLKEVAREYFLKEPSGRPSIKEVLKEGQEVIVQVDKEERGNKGAALTTFISL
AGRFLVLMPNNARAGGISRRIEGEERSQLKEAMSQLTVPEKMGLIVRTAGIGRSPEELQW
DLDYLVQVWESITEEAAKRPAPFLVYRESNVIIRAMRDYLRQDIGEVLIDSPQVHQEALA
FIRQVMPSYQQKIKLYSDEVPLFSRYQIESQIETAYEREVKLPSGGSIVIDHTEALVSID
INSARATRGSDIEETALQTNLEAADEIARQLRLRDIGGLVVIDFIDMGPARNQREVENRA
RDALKLDRARVQIGRISRFGLMEMSRQRLRPSLGETSGGVCPRCDGQGTIRDVRSLSLSV
LRLIEEEAMKERSAQIRAILPVPVATYLLNEKRTILADIERRQDVRVVILPNPDMDTPHY
DVQRLRDDHVDEEGTTHTSSFELSMDTEVGKEPESTFGKPVQRAEAAVKSVVHNAPAPAS
LQKEPAAPAAAPTPRATPASRTTSAPQTPPAMQNAGLFGRLVKGFARFLGGEEQNAASET
STQTQRTSKDRSTEQRTSERSTGQSSDSRQRNRRSNQRSGSDNQRSDSQRSDRSRQQDSR
SKSNQDERQQDSRSKSSQDDRRSKTSQDSSNKSAQDTSDNRSSRSRRSQQDDKRSQDNRS
QESRSQDSRSQDNRKPSETRSDNRRTDKAASETTDSGKPKRTRNNPRNRTRTHALNPEAV
AEQQRLQAEGERNGDDATAVDSKAEQPKTDKPADVKAEPSSKPTDAKAEQPKAEPQADKP
TDVKAEPSSKPTDAKAEQPKAEPQADKPTDVKAEQPKAEPQADKPADVKAEQSSKPMDAK
AEQPKAEPQADKPTDVKAEPSSKPTDAKAEQPKAEPQADKPADVKAEQSSKPMDAKAEQP
KAEPEPQADKPTDVKAEQPKAEPQASKPADASAEPAKADKQPVEATAEQAEAAASPRRRR
RAHNDPREQRRQAQQGGCTGEGQ
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggatgctcatcaacgcgacccagccggaagagctgcgcgtcgccctggtcgat
ggacaacgcctgtacgacctggacatcgaatccggtgcccgggaacagaagaaagccaat
atctaccgcggcaagatcactcgagtagaaccctcccttgaagccgcctttgtcgatttc
ggcgccgagcgccatggtttcctgccactcaaggaagtggcccgtgaatatttcctcaag
gaaccctccggccgccccagcatcaaggaagttctgaaggaaggtcaggaagtcattgtc
caggtagacaaggaagagcgtggcaacaagggtgccgcactgacaacctttatcagcctg
gcgggccgttttctggtgctgatgcccaacaacgctcgtgctggcggcatctcccgccgc
atcgaaggcgaggagcgcagccagctcaaggaagccatgagccagctgaccgtccccgag
aagatgggcttgatcgtgcgcaccgccggcatcggtcgttcaccggaagagctccagtgg
gacctcgactacctggtgcaggtctgggagtcgatcaccgaagaggcggccaagcgccct
gcccccttcctggtctaccgcgagtccaatgtcatcattcgcgccatgcgcgactacctt
cgccaggatatcggcgaggtgctgatcgacagcccgcaggtacaccaggaagcgctggcg
ttcattcgccaggtcatgccgtcctaccagcagaagatcaagctctactctgacgaggtg
ccgctgttctcgcgctaccagatcgagtcccagatcgagacggcctacgagcgcgaagtc
aaactgccttcaggcggctccatcgtcatcgatcacaccgaggcactggtctccatcgat
atcaactcggctcgcgccacacgcggcagtgacatcgaagagacagcattacagaccaac
ctggaagcggccgacgagatcgctcgccagctgcgtctgcgtgatatcggtggcctcgtg
gtcatcgacttcatcgacatgggaccggcgcgtaaccagcgcgaagtcgagaatcgcgca
cgtgacgccctcaagctcgaccgtgcacgggtccagattggacgcatctctcgcttcggg
ctgatggagatgtcccgtcagcgtctgcgcccctcgctgggagagaccagcggaggagtc
tgccctcgttgcgacggacagggcaccattcgtgatgtgcgctcgctgtcactgtcggtg
ctgcgcctgatcgaagaagaggcgatgaaggagcgcagcgcgcagatccgcgccattctt
cctgtgccggttgccacctacctgctcaacgagaagcgcaccattctcgctgacatcgag
cgtcgtcaggacgtgcgtgtggtgatcctgcccaacccggacatggatacgccccactac
gacgtgcagcgtctgcgcgatgaccacgtcgatgaggaaggcacaacgcacacctcgagc
ttcgagctgtccatggacaccgaagtcggcaaggagcctgaatcgaccttcggcaagccc
gtgcaacgtgcagaagccgctgtgaagagcgtcgtccacaacgctccggctccggcttca
ctgcagaaggagcctgcggctcccgctgcagcgccgacaccgcgcgccacccctgcttcc
cgcaccacttccgcgccacagacaccgccagctatgcagaatgccggcctgttcggccgc
ctggtcaagggtttcgcacgcttcctcggcggtgaagagcaaaatgctgccagcgagacc
agcacccagacgcagcgtaccagcaaggatcgcagcaccgagcagcgtaccagcgagcgc
agcactgggcagtccagcgacagtcgtcagcgcaatcgccgcagcaatcagcgcagtggc
agcgacaaccagcgcagcgatagtcagcgcagtgaccgctctcggcagcaggacagccgc
agcaagtccaaccaggacgagcgccagcaggacagccgcagcaaatccagccaggacgat
cgtcgcagcaagacgagccaggactccagcaacaagtctgctcaggataccagcgacaat
cgcagcagccgctcgcgccgcagccagcaggatgacaagcgcagccaggacaaccgctct
caagaaagtcgttcccaggacagccgcagtcaggacaaccgtaagcccagcgaaacccgc
agcgacaaccgtcgtactgacaaggcggccagcgagaccaccgacagtggcaagccgaag
cgcacacgcaataatccgcgcaaccggacccgcacccatgcgctcaaccccgaagccgtt
gccgaacagcagcgtctacaggccgaaggcgagcgtaacggtgatgacgccacagcagtc
gacagcaaggccgaacagccgaagactgacaagcccgccgacgtcaaggctgagccgtcc
agcaagccaacggacgccaaggcagaacagcccaaggccgagccgcaggctgacaagccc
accgacgtcaaggctgagccgtccagcaagccgacggacgccaaggcagaacagcccaag
gccgagccgcaggctgacaagcccaccgacgtcaaggctgaacaacccaaggccgagcca
caggctgacaagcccgccgacgtcaaggctgagcaatccagcaagccgatggatgccaag
gcagaacagcccaaggccgagccgcaggctgacaagcccaccgacgtcaaggctgagccg
tccagcaagccgacggacgccaaggcagaacaacccaaggccgagccgcaggctgacaag
cccgccgacgtcaaggctgagcaatccagcaagccgatggatgccaaggcagaacagccc
aaggccgagcccgagccacaggctgacaagcccaccgacgtcaaggcagaacagcccaag
gccgagccgcaagccagcaagccagctgacgccagcgcggaaccggccaaggcagacaag
cagcccgtcgaggccacggcggaacaggccgaggcagcagcctcgccacgccgtcgccgc
cgcgctcacaacgacccacgtgagcagcgccgccaggcacagcagggaggctgcactggc
gaaggccagtaa
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integrated database retrieval system
