Halomonas cupida: MRB56_14690
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Entry
MRB56_14690 CDS
T11149
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
hck Halomonas cupida
Brite
KEGG Orthology (KO) [BR:
hck00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hck03019
]
MRB56_14690 (hrpA)
Enzymes [BR:
hck01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
MRB56_14690 (hrpA)
Messenger RNA biogenesis [BR:
hck03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
MRB56_14690 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
DEAD
AAA_22
AAA_19
nSTAND3
T2SSE
SLFN-g3_helicase
nSTAND_NTPase5
AAA_25
FtsK_SpoIIIE
NACHT
AAA_30
SRP54
Motif
Other DBs
NCBI-ProteinID:
XNS36867
LinkDB
All DBs
Position
complement(3242614..3246555)
Genome browser
AA seq
1313 aa
AA seq
DB search
MLEEVMLRDRPDLAKRLSGLQRRVREGKPSDRGLGEVEKQVQRSQRLLEARRAQRVTLEY
PEALPVAARRDDILAALAEHQVVVVAGETGSGKTTQLPKLCIELGLGRRGLIGHTQPRRL
AARSVATRLAEEMQVNLGDQVGYQVRFTDQTSDDTLVKLMTDGILLAETRHDPDLRRYDT
LIIDEAHERSLNIDFLLGYLKRLLERRRDLKIIITSATIDVERFSQHFSLPGPDGKPRPA
PVIEVTGRTFPVEVRYRPLVRDADDEEDRTLSEGILHAVEEIESIEREKRWFSGPRDILV
FLPGEREIRETADILRRADLRHTEVLPLYARLSNAEQNRVFAAHSGRRIVLATNVAETSL
TVPGIRYVVDPGLVRISRYSYRAKIQRLPVEAVSQASANQRKGRCGRVAEGVCIRLYDEE
DFLSRPEFTDPEIRRTNLASVILSMLSLKLGSIEAFPFVDPPDSRFVSDGFRLLHELGAV
DEQQRLTPQGRRLARLPIDPRLARMLLAGDEQQCLRDVLVVVSALAVQDPRDRPADKREA
ADQAHRRWQDPESDFVAILNLWQGFEQAREELSGNRLRRWCRDHYLNYLRLREWHDTFRQ
LRQLLRDLDIQVPPPAVVVEDDAEQVKEQRRQAGVAMHRALLTGLLSNLGTLTENRDYLG
ARNRKFMIHPSSGLSKKTPKWVMAMEMVETSRLFARTVARIDPQWIEPLAGHLVKRNYSE
PHWEMKRAQVVAFEQVTLFGLPIVARRKVHYGPIAQRESWELFIRRALVEGEFRTRGEFL
AHNRALVEEVTDLEDRARRRDILVDEETLFDFYAERVPEHIVNGKGFEAWRRKAEEQNPQ
LLMFDREALLAREAEDVTEAQYPDELILDGVRYPLSYHFAPGAEDDGVTMTVPAAMLPQL
SASRLEWLVPGLLRDKCIALLKSLPKSMRRQVVPIPDWVDAALASLTPGEGGLREALGEF
LRVKTGVRMHLDDWRLDQLEPHLIMNLRVVDHNGKVLGQGRDLRELERRFELAAGEGARA
LARSVEETEQWQTFPDEPLPESRVTHQAGIRVEAFPALVADSDGLKLELFDHPDKAREAH
RSGVVKAAMERLADQVRAIERLPGLDKCALLFTKVGSKRALSDDLVHAVFRQVIAVDPLP
RDASALEARINEVGGDLVPHAEKLIAMLIPALEGHLEVTKALKGNLNLALALVYSDLKAQ
MQRLVHPGFVTEAGSWLEAYPRYMEAALVRLEKAPRERMRDQMHMQEVQQFEAQLAARRE
AQRKGTVEDPALVEFRWWVEELRVSLFAQQLGTAMPVSSKRLDKRWAELTGRG
NT seq
3942 nt
NT seq
+upstream
nt +downstream
nt
atgctggaggaggtgatgctgcgtgatcgtcccgatctggcgaaacgcctgtccggtctg
caacgccgtgttcgcgaaggcaagccgagcgaccgtggcctgggagaagtggagaaacag
gttcagcgctcgcaacgactgctcgaggcacgccgtgcacagcgagtcacgctggaatat
cccgaggccctgccggtcgccgccaggcgggatgacattctggccgctctcgccgaacac
caggtggtggtcgtggccggtgagaccggttcgggcaagaccactcagctacccaagttg
tgtatcgaactggggctgggacgacgtggtttgatcggtcatacccagcctcgacgcctg
gcagcacgctcggtggccacgcgactggccgaggagatgcaggtcaatctcggtgatcag
gttggctatcaggtacgttttaccgaccagaccagtgatgacaccctggtcaagctgatg
accgatggtattctgctggccgagacgcgacacgatcccgacttgcgtcgctacgatacg
ctgatcatcgacgaggcccatgagcgcagcctcaacatcgacttcctgctgggttatctc
aagcgattgctggagcgacgcagagatctcaagatcatcatcacctcggcgaccattgac
gtcgagcgcttcagtcagcacttcagcctgccggggccggatggtaaaccacgccctgcg
ccggtgatcgaagtgaccgggcgtaccttcccggtggaggtgcgctatcggcccctggtg
cgtgatgccgacgatgaggaagatcgcaccctgagtgaaggcattctgcatgccgtcgag
gaaatcgagtcgatcgagcgtgagaagcgctggttcagtggtccacgggatatcctggtg
ttcctgcccggtgagcgcgagatccgcgagacggctgatatattgcgccgtgctgacctg
cgccataccgaggtgctgccgctgtatgcacggctttccaatgccgagcagaaccgtgtc
tttgccgcgcacagtggtcggcgcatcgtgctggccaccaatgtggccgagacatcgctg
acggtgccggggattcgctacgtggtcgatccaggactagtgcgcatcagtcgttacagc
tatcgagccaagatccagcgcctgccggtggaggccgtcagccaggccagtgccaatcag
cgtaagggacgttgtggacgtgttgccgaaggggtctgcattcgcctctacgatgaggag
gatttcctttcgcggccggaatttaccgatccggagattcggcgtaccaacctggcctcg
gtgattctatcgatgctgtcgctcaagctcggcagcatcgaggccttcccgttcgtcgat
ccgccggattctcgctttgtcagtgacggtttccgtctgctgcatgaactgggcgcggtg
gatgaacagcagcgcctgacgccccaggggcggcgcctggcgcgtctgccgattgacccg
cgtctggcccgcatgctgctggccggcgatgagcagcaatgcctgcgagatgtgctggtg
gtggtatcggcgctggcggtgcaggacccacgagatcgcccggcagacaagcgcgaggca
gcagaccaggcgcatcgccgttggcaggaccctgagtcggatttcgtggccatcctcaat
ctgtggcagggcttcgagcaggctcgtgaggaattgtccggcaaccggctgcggcgctgg
tgtcgcgatcattacctgaattacctgcggctgcgggaatggcatgacaccttccgccag
ttgcgccagttgttgcgcgacctcgatatccaggtgccgccacctgccgtggtggtcgag
gacgatgccgagcaggtgaaggagcagcgtcgccaggccggtgtcgccatgcaccgagct
ctgctgaccggtctgttgtcgaatctcggtacactgaccgaaaatcgcgattacctgggc
gcgcgtaaccgcaagttcatgatccacccatcctccgggctgtcgaagaagacccctaaa
tgggtaatggccatggagatggttgagacatcacggttgtttgctcgcactgtggcgcgc
attgacccccaatggatcgagccgctggccgggcatctggtcaagcgcaattacagcgag
ccgcattgggagatgaagcgggcccaggtggtggccttcgagcaggtgaccctgttcgga
ttgccgattgtcgctcgacgcaaggtgcattacggccccattgcccaacgggaatcatgg
gaattgttcattcgtcgggcgctggtggaaggtgagttccgtacccgaggtgagtttctg
gcccataaccgtgcgctggtcgaggaagtcaccgacctcgaggatcgtgctcgtcggcgt
gacattctcgtcgacgaggagacactgttcgacttctacgccgaacgggtgccggagcat
atcgtcaacggcaaggggttcgaggcctggcgacgcaaggcggaggagcagaatcctcag
ttgctgatgttcgatcgtgaggcactgttggcgcgggaggcagaggatgtcaccgaagct
cagtatcccgatgagttgatactcgacggcgtgcgttacccgctgagctaccattttgcc
cctggcgccgaggacgacggcgtgaccatgacggtgccggcggcgatgttgccacagctg
tcggcatcacgtctggagtggctggtgccaggcctgctgcgcgacaagtgcatcgcactg
ctcaagtcgctgcccaagtcgatgcgtcgccaggtcgtaccgatccctgactgggtcgat
gccgccctggcgtcattgacgccaggcgagggtgggctgcgcgaggcattgggggagttc
ctgcgcgtcaagaccggcgtacggatgcacctcgatgactggcggctggaccagctcgag
cctcacctgatcatgaacctgagggttgtcgaccacaacggcaaggttcttggtcagggg
cgcgatctacgcgagctggagcgacgcttcgagttggcggcaggagagggcgccagagct
ctggcacggtcggtggaggaaaccgagcagtggcagaccttccctgacgagccgctgccg
gagtcacgagtgacgcatcaggccggcattcgtgtcgaggctttcccggccctggtggcg
gacagcgatgggctcaagctcgagctgtttgatcaccctgacaaggctcgtgaagcgcac
cggagtggcgtggtcaaggcggccatggagcgccttgccgaccaggtgcgggccatcgag
cgcctgccggggctggacaagtgtgcattgctgtttaccaaagtgggtagcaagcgagcc
ttgagtgatgacctggtgcatgcggtattccgtcaggtcatcgccgtagaccctctgcca
cgtgacgcgtcggcgctcgaggcgaggatcaacgaggtcggtggcgacctggtgccccat
gccgagaagctgatcgctatgctgatacctgcgctggaaggacacctggaggtgacaaag
gcgttgaaggggaatctgaatctggcgttggcattggtatacagtgatctcaaggctcag
atgcagcgtctggtgcaccccgggttcgtaaccgaggcaggatcctggctggaggcgtat
cctcgttatatggaagctgctctggtgcgtcttgagaaggcgccgcgtgagcgtatgcgt
gatcagatgcacatgcaggaggtccagcagttcgaggcgcagctggccgcgcgtcgtgag
gcacagcgcaaggggacggtggaagacccggcactggttgagttccgctggtgggtagag
gagttgcgtgtatccctgtttgctcagcaactggggacggcaatgccggtgtcgagcaag
cgtctcgacaagcggtgggcagaattgaccgggcgtggctag
DBGET
integrated database retrieval system
