Halomonas cupida: MRB56_18280
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Entry
MRB56_18280 CDS
T11149
Symbol
rpoS
Name
(GenBank) RNA polymerase sigma factor RpoS
KO
K03087
RNA polymerase nonessential primary-like sigma factor
Organism
hck Halomonas cupida
Brite
KEGG Orthology (KO) [BR:
hck00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hck03021
]
MRB56_18280 (rpoS)
Transcription machinery [BR:
hck03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
MRB56_18280 (rpoS)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r1_2
HTH_20
Sigma70_r4_2
Put_DNA-bind_N
Motif
Other DBs
NCBI-ProteinID:
XNS33391
LinkDB
All DBs
Position
complement(4052780..4053787)
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AA seq
335 aa
AA seq
DB search
MSILERDLQDVNLDTVDEADDATVDDVSDESIVDDSDDAEEENEEFEKALGKEDRYSRQS
LDATQIYLNEIGFSPLLTPEEEVYYGRLARKGDPQGRARMIESNLRLVVKIARRYLNRGL
TLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIHVVKE
LNIYLRAARELTQKLDHEATAEEIAEHLDKPVATVKKMMGLNERVSSVDYPMGGDSDKPL
IETLADDNEQGPESTLVDGDVKAHVDQWLAELTDKHCEVVVRRFGLRGHEAATLEQVGEE
IGLTRERVRQIQVEALKKLRRMLDKQGLSLDAIFE
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atgagcatacttgaacgggatcttcaggatgtgaatctcgatacggtggacgaggctgat
gatgctaccgtcgatgatgtgtccgacgagagcattgtcgatgattcggacgacgctgaa
gaggaaaatgaggaattcgagaaggctctcggcaaggaagatcgctattcgcgtcagagt
ctcgatgcgacgcagatctacctcaatgagattggcttctcccctctgctgacgccggaa
gaagaggtctactatggccgcctggcgagaaagggggaccctcaggggcgggcccgaatg
atcgagtccaacctgcggctggtggtcaagatcgcccggcgttatctcaatcgtgggttg
acgctgctggatctaatcgaggagggcaatctcggtttgattcgcgcggtggagaaattt
gatcccgagcgtggtttccgcttctcgacctacgcgacctggtggattcgtcagacaatt
gaacgggcgttgatgaaccagacgcgcaccatccgtctaccgattcatgtggtcaaggaa
cttaacatctacctgcgtgccgcacgtgagctgacccagaaacttgaccatgaagcgacc
gccgaggaaattgccgaacacctcgacaagccggtggcgacagtcaagaagatgatgggg
ctcaatgagcgcgtctcttcggtggattatccgatggggggcgatagtgacaagcctctt
atcgaaactctcgccgacgacaatgagcaggggcctgagtccactctggtggacggcgat
gtaaaggctcatgttgatcaatggctggccgaattgactgacaaacactgtgaagtcgtg
gtgcgacgttttggtctgcgtggccatgaagcggcgacgctggagcaggttggtgaggag
attggcctgactcgggagcgcgtacgtcagatccaggtcgaggcattgaagaagctgcgg
cggatgctcgacaagcagggcctctcgttggatgccatcttcgaataa
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