Halomonas cupida: MRB56_18305
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Entry
MRB56_18305 CDS
T11149
Name
(GenBank) tRNA pseudouridine(13) synthase TruD
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
hck Halomonas cupida
Brite
KEGG Orthology (KO) [BR:
hck00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hck03016
]
MRB56_18305
Enzymes [BR:
hck01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
MRB56_18305
Transfer RNA biogenesis [BR:
hck03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
MRB56_18305
Prokaryotic type
MRB56_18305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
Motif
Other DBs
NCBI-ProteinID:
XNS33396
LinkDB
All DBs
Position
complement(4057442..4058551)
Genome browser
AA seq
369 aa
AA seq
DB search
MRDDIRWPPEWPRALDARFGAPVAGTYRTCADDFVVEECLGFEPEGLGEHLWLWIEKRET
ATSDVVRQLARLCDVGPRDIGYAGMKDRIAVTRQWFSVHLPGREAPGDLEVQLAERGFRV
QRVTRHPRKLKRGVHRGNRFTLRLGGPVTTDAMLEQRWQAIVEGGVPNYFGPQRFGSDGR
NLFRARDLLARGWRKRDDREGMLLSAARSFLFNAQLAERLAAGQWQSVLDGDVMMLDGTQ
SLFAVETRDAELEQRLVDGDIHPTAVLWGQGGSWAAAEAERLEQRALEAWPGLCHGLERA
GVKAARRALRVRLGETRIQRDANAVTLEFTLPSGAFATAVLRELMDEATLDFRSLPEQPS
DSATRGESP
NT seq
1110 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgatgacattcgctggccacccgagtggccacgtgccctggatgcacggtttggt
gcgccggtggcgggcacttatcggacctgtgccgacgacttcgtggtcgaggaatgcctc
ggctttgagccggaggggctgggcgagcacctgtggctgtggatcgagaagcgtgaaact
gccaccagcgacgtcgtcaggcagttggctcggctgtgcgatgtaggccctcgggatatc
ggctatgccggcatgaaggaccgtatcgccgtgactcggcaatggttttcggtgcacttg
cccggacgggaggcccccggcgatctggaggtgcaactggccgagcggggctttcgggtg
cagcgggtgacacgtcatccgcgcaagctcaagcgtggtgtgcatcgcggtaatcgcttt
accctgcgtcttggcgggccggtcaccacggatgcgatgctggagcagcggtggcaggcg
attgtcgagggtggcgtgcccaattactttggaccccagcgcttcggcagcgatggacgc
aacctgtttcgtgcccgggacctgctggcgcgtggctggcgcaagcgtgacgaccgtgag
ggcatgttgctgtcggcagcacgcagcttcctgttcaatgcgcaactggccgaacgtctg
gccgcaggccagtggcaatcggtgttggatggtgacgtcatgatgctcgatggcacccag
agcctgtttgctgtcgagacccgcgatgctgaactggaacaacgcctggtggacggtgat
attcaccccacggcagtgctctgggggcaggggggctcatgggcggcagcggaagccgag
cgtctggagcaacgggcgctggaggcttggccgggactctgtcacggccttgagcgagcc
ggggtcaaggctgcccggcgcgcgctccgggtgaggctcggggagacgcggatacagcgt
gatgcgaatgctgttacgctggagttcactctgcccagtggggccttcgcgacggcggta
ctgcgagaactaatggacgaagcaacgctggactttcgcagcctgccggagcagccttcc
gattcagccaccaggggagagtcgccatga
DBGET
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