Halomonas cupida: MRB56_22680
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Entry
MRB56_22680 CDS
T11149
Symbol
pcnB
Name
(GenBank) polynucleotide adenylyltransferase PcnB
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
hck Halomonas cupida
Pathway
hck03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hck00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MRB56_22680 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hck03019
]
MRB56_22680 (pcnB)
Enzymes [BR:
hck01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
MRB56_22680 (pcnB)
Messenger RNA biogenesis [BR:
hck03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
MRB56_22680 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol_arg_C
PolyA_pol
PolyA_pol_RNAbd
Motif
Other DBs
NCBI-ProteinID:
XNS34228
LinkDB
All DBs
Position
5030879..5032282
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AA seq
467 aa
AA seq
DB search
MIKGFTRFLQSPGESLRSLFGPQEAAAGNPTPRVITRDEHPISRSQFSDAALKVLYRLHN
SGYDAYLVGGCLRDSLLGMTPKDFDVATNATPEQVKQLFRNSRIIGRRFRIVHVRFGREV
IEVTTFRGKPSDDHGDHVASQSDAGLLLRDNVWGNIEEDALRRDFTVNALYYSIADFTIH
DFAGGLDDIASRTLRLIGDPGTRYREDPVRMLRAIRFAAKLDFDIAPATEAPIHDLAPLL
LQIPPARLFDEVLKLFMSGDGLATFRLLREYGLFAMLFPEADECIAELPWFEALIEQALT
STDKRIREDRPVTPAFLLAAFMWGPVQRRQADVEADGMPPVPALQAAAQQVISRELKHVS
VPKRFSMPMRDIWDLQQRLPQRRGKRAFQTREHPRFRAAYDFLLLREAAGEIEPGLGDWW
TAFQEADDHEQRRLLGKVGVDPASGPNPRKRRRRRRKPRSDSSSPES
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgatcaaaggatttacccgctttctgcagagccctggcgaaagcctccgctctctcttc
gggccgcaggaagcagccgctggcaacccgacacctcgcgtcatcacccgcgacgaacac
ccgatatcgcgcagccagttcagcgacgctgcgctcaaggtgctgtatcggctgcacaat
tccggctatgacgcttacctggtcggtggctgcctgcgcgactccctgctgggtatgaca
cccaaggattttgatgtcgcgaccaacgccacccccgaacaggtcaagcaactgttccgc
aattcgcggatcatcggacgtcgcttccgcatcgttcatgtgcgcttcggccgtgaggtg
atcgaggtcacgaccttccgtggcaagcccagcgatgatcatggcgatcatgtcgcctct
caatccgatgccggcctgctgctgcgtgacaatgtgtggggcaatatcgaggaagacgcg
ctacgccgcgatttcaccgtcaatgccctctactacagcattgccgatttcaccattcat
gacttcgccggcggcctcgatgatatcgcctcgcgcactctgcgcctgatcggagatccg
ggcacacgctatcgggaagacccggtgcgcatgctgcgtgccattcgttttgccgccaag
ctcgacttcgatatcgctccggctaccgaagcacccattcatgaccttgcccctctgctg
ctgcagattccgcccgcaaggctgttcgatgaagtgctcaaactgttcatgtccggcgat
ggtctggccactttccgcctgttgcgcgagtatggcctgtttgccatgttgttcccggaa
gccgatgaatgcatcgcagagcttccctggttcgaggcactcatcgagcaggctctgacc
agcacagacaagcgcattcgtgaagaccgtccggtgactccggcattcctgctcgccgcc
ttcatgtggggcccggtgcaacgtcgtcaggccgacgtcgaagccgatggcatgccaccg
gttccggccttgcaggccgccgctcagcaggtcatcagccgcgagctgaagcacgtctcg
gtgcccaagcgcttcagcatgccgatgcgcgacatctgggacctgcagcaacgtctgcct
cagcgacgcggtaaacgcgccttccagacccgtgagcacccacgtttccgtgccgcctac
gacttcctgctgctgcgagaggccgccggtgaaatcgagccgggactgggcgattggtgg
accgcctttcaggaggctgacgaccacgagcagcgtcgtctgctgggcaaggtcggagtc
gatcctgccagtggccccaatccacgtaaacgacgcaggcgtcggcgcaagccacgttcg
gactcctcttcccctgagtcatga
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