Halomonas cupida: MRB56_23900
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Entry
MRB56_23900 CDS
T11149
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
hck Halomonas cupida
Pathway
hck03420
Nucleotide excision repair
hck03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hck00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MRB56_23900 (uvrD)
03430 Mismatch repair
MRB56_23900 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hck03400
]
MRB56_23900 (uvrD)
Enzymes [BR:
hck01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MRB56_23900 (uvrD)
DNA repair and recombination proteins [BR:
hck03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MRB56_23900 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
MRB56_23900 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PcrA_UvrD_tudor
AAA_12
Motif
Other DBs
NCBI-ProteinID:
XNS34458
LinkDB
All DBs
Position
complement(5286421..5288628)
Genome browser
AA seq
735 aa
AA seq
DB search
MDDVTPIIDGLNSAQHEAVCAPQGNMLVLAGAGSGKTRVLVHRIAWLMQVEGLSPYAVLA
VTFTNKAAREMRTRLEAVLKMSLRHVWVGTFHSIAHRLLRTHWQDARLPQHFQIIDSDDQ
LRLVKRLLKDARVDDERFPPRQVQSFISGCKEEGLRPHQVRINSDAYVEQMVALYDTYQL
TCERGGLVDFGELLLRSLELLRDNPALLAHYQERFGHVLVDEFQDTNTLQYAWLKLLTGQ
RTPMTVVGDDDQSIYGWRGARVENIRRFEEEFSDTRTVRLEQNYRSTSAILEAANTLIRQ
NSDRMGKELWTAGERGEPISVYAGFNDMDEARFIVDTIKEKVDEGFNRRDIAILYRSNAQ
SRILEETLIRQGMPYRIYGGHRFYERLEIKNSLAYLRLLLNRDDDASLERVINVPARGIG
TRTVEILRERARHAEASLWQALHDSLADGSLKGRAATALKAFADLIDGLDDEVSSLELHQ
IIEVINERSGLIEHHRNEKGEKGQARVENLEELINAARAFVHGETAQDDVEIGEGMAALE
AFLAEAALNAGEHEADEFEDSVQLMTLHSAKGLEFPVVFIAGVEEGLFPHRMSLEEPGRL
EEERRLCYVGVTRAMRKLYLTHAEIRRMHGKETFQRPSRFLRELPESLLEEIRLRGQVSR
PVTARPTPSRWQQAGIEASDGLPALALGQRVSHPVFGDGVILNAEGQGERARVHVSFEDE
GDKWLVLGFAKLTPL
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atggatgatgtcacgccgatcatcgacggcctcaattcggctcagcacgaggcggtatgc
gccccgcaaggcaacatgctggtgctggccggggccggctccggcaagacacgggtgctg
gtacaccgcattgcatggctgatgcaggtcgaaggcctgtcgccctatgcggtactggcc
gtgacctttaccaacaaggccgcgcgcgagatgcgtacccgcctcgaggcggtgctgaag
atgtcgttgcggcatgtctgggtcggtactttccactccatcgcccaccgtctattgcgc
actcactggcaggatgcgcgtctcccgcagcatttccagatcatcgattccgatgatcag
ctgcgtttggtcaagcgtctgctgaaggatgcccgggtcgatgacgagcgttttccgcct
cgtcaggtgcaatcgttcatttccggctgcaaggaagaagggttgcgaccgcatcaggta
agaatcaacagcgatgcctacgtcgagcagatggtggcgttgtacgatacctatcagttg
acctgtgaacgtggtggactggtcgatttcggtgaactgctgttacgcagcctcgagctg
ttgcgcgacaatccagcgttgctggcacactatcaggagcgcttcggccatgtgctggtc
gatgagttccaggataccaacaccctgcagtatgcctggctcaagctgctgaccggccag
cgcaccccgatgacggtggtgggtgatgacgaccagtcgatctatggctggcgtggtgca
cgggtcgagaacattcgccgtttcgaggaggagttttccgatacccgcaccgtacgcctt
gagcagaactatcgctcgaccagcgccatcctcgaggcagccaataccctgattcgtcag
aactccgaccgcatgggcaaggagctgtggacagcaggggagcgtggcgagccgatctcg
gtgtatgccggcttcaacgatatggatgaggcacgcttcatcgtcgataccatcaaggag
aaggtcgatgagggcttcaaccgccgtgatatcgccattctctaccgctccaatgcccag
tcgcggatcctcgaggaaaccctgattcgtcagggcatgccctatcgcatctacggtggt
caccgcttctatgagcgtctcgagatcaagaattcgctggcctatctgcgtctattgctc
aatcgtgatgatgacgcctcgctggagagggtcatcaatgtgccggcgcgagggatcggc
acccgcacggtcgagatcctgcgtgagcgcgcgcgccacgcggaagcctcactgtggcag
gccctgcatgactcactcgctgatggctcgctgaaaggccgggcagcaacggcactcaag
gcttttgccgacttgatcgatggcctcgatgacgaggtgtccagcctcgagctgcaccag
atcatcgaggtgatcaatgaacgctcgggattgatcgaacaccatcgcaacgaaaagggc
gagaagggccaggcgagggtagagaacctggaggaactgatcaatgcagcgcgggccttc
gtccacggggaaacggcgcaggacgatgtcgagatcggtgaaggcatggcggcgctcgag
gcctttcttgccgaggctgcactcaacgccggtgagcacgaagctgatgagttcgaggac
agtgtgcagttgatgacgctgcactcggccaaggggctggagtttccggtggtgttcatc
gctggggtggaagaaggactctttccccatcgcatgtcgctggaagagccgggtcgactc
gaggaagagcgacgcctgtgttacgtgggcgtgacgcgcgccatgcgcaagctctacctg
acccatgccgagatacgccgtatgcatggcaaggaaaccttccagcgaccgtcgcgcttc
ctgcgcgaattgccggagtcgctgctcgaggaaatccgcctgcgtggccaggtatcacgg
ccggtcacagccaggcccacgccgtcgcgctggcagcaggctggtatcgaggccagcgac
ggtctcccggcgctggcgctgggtcaacgtgtctcccatccagtattcggcgatggggtc
attctcaatgccgaaggccagggggagcgggctcgtgtgcatgtcagcttcgaggacgaa
ggtgacaagtggctggtgctgggctttgccaaactgactccgctgtaa
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