Helicobacter cholecystus: NCTC13205_00175
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Entry
NCTC13205_00175 CDS
T06600
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hcl
Helicobacter cholecystus
Pathway
hcl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hcl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC13205_00175 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hcl03019
]
NCTC13205_00175 (deaD)
03009 Ribosome biogenesis [BR:
hcl03009
]
NCTC13205_00175 (deaD)
Enzymes [BR:
hcl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCTC13205_00175 (deaD)
Messenger RNA biogenesis [BR:
hcl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCTC13205_00175 (deaD)
Ribosome biogenesis [BR:
hcl03009
]
Prokaryotic type
rRNA helicases
NCTC13205_00175 (deaD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
VEJ24048
LinkDB
All DBs
Position
1:192718..194130
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AA seq
470 aa
AA seq
DB search
MENTKFEEMGLRENVLKGIRDMGFVTPSPVQSQSIPIALKGHDLVAQAQTGTGKTAAFSI
PILNQIEKNGEIEALVITPTRELAMQISDEVFKLGKFVRVKTVCVYGGQSIRRQCELLEN
NPQVLVATPGRLLDHLKNNRIPNFSPKIVVLDESDEMLDMGFLDDVEEIFSYLPSNRQTL
LFSATMPEQIQKLTHKILDKPKYVKITPANIANTDITQKCYVINEGHRDEAIVRLMDVFT
PKKSIIFTSTKKEVDALAQRLIEAKYRAGALHGDMDQRARIDAIKAFKADKINILVATDV
AARGLDISDVSHVFNYHIPLNPESYVHRIGRTGRAGKKGMAITLITPLEFKELKRIKDEV
KHPLELEELPVFEASHNQIVQKILKTKIIDEAMDIYNGLLDQNDEANTILKLISYLLKEG
GKNKIGPNLQEINRLQEQEKRPKSKDKGSRKPDGRNFTSRTSRANSRGRR
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atggagaatacaaaatttgaagaaatggggttacgtgagaatgtgttgaagggtattagg
gatatggggtttgtgactccaagccctgtgcaatcccagtctattcctattgcactcaag
gggcatgatcttgttgcacaggctcaaacaggtacaggaaaaacagcagctttttcaatc
cctatcctcaatcaaattgaaaaaaatggagagattgaggccttggtgattacacctaca
agagaacttgcaatgcaaatcagtgatgaggtttttaagcttggaaaatttgttcgtgtt
aagactgtgtgcgtatatggtggtcagtcaatccgtcggcaatgtgaacttttagaaaac
aatcctcaagtgcttgttgcaacaccgggaagattgcttgatcatcttaaaaataatcgt
attccaaatttctcacctaaaatcgttgttcttgatgaaagtgatgaaatgttggatatg
ggatttttagacgatgttgaagaaattttttcctatttgcccagcaatcgacaaacactg
cttttttcagcaactatgcctgaacagattcaaaaacttacccataagattcttgataaa
cccaaatatgtcaagatcactcctgcaaatattgcaaatactgatattactcagaaatgc
tatgtgattaatgaaggacatagggacgaggcaattgtaagacttatggatgtctttaca
cctaaaaaaagtattatttttacaagtactaaaaaagaagtggatgcacttgcacaacgt
ttgattgaagcaaagtatagagcaggtgccttgcatggcgatatggatcaaagggcaaga
attgatgcaattaaagcatttaaggctgataaaatcaatattcttgttgcaacagatgtg
gctgcaagagggcttgatattagtgatgtaagccatgtgtttaattatcatattcctctt
aatcctgagagctatgtgcatcgaattgggcgaactggaagagcaggaaaaaaagggatg
gctatcacgctcattacacctttagagtttaaagaacttaaacgaattaaagatgaagta
aagcatcccttagagcttgaagaactgcctgtatttgaggcaagtcataatcaaattgtg
caaaaaattcttaaaacaaaaattattgatgaggcgatggatatttataatggtttgctt
gatcaaaatgatgaagccaatacgatattaaagcttatctcctatcttcttaaagagggg
ggtaaaaataaaattggtccaaatctccaagaaatcaatcggcttcaagagcaagagaag
agaccaaaaagtaaagacaagggatcaaggaaacctgacggaagaaattttacatctaga
acttcaagagcaaactcaagggggagaagataa
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