Helicobacter cholecystus: NCTC13205_00467
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Entry
NCTC13205_00467 CDS
T06600
Symbol
rny
Name
(GenBank) phosphodiesterase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
hcl
Helicobacter cholecystus
Pathway
hcl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hcl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC13205_00467 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hcl03019
]
NCTC13205_00467 (rny)
Messenger RNA biogenesis [BR:
hcl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NCTC13205_00467 (rny)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HD
KH_1
RNase_Y_N
HDOD
KhpA-B_KH
HTH_48
YfhO
FUT8_N_cat
KRR1-like_KH2
SIMPL
KH_2
Ly49
PCI
Motif
Other DBs
NCBI-ProteinID:
VEJ24331
UniProt:
A0A3D8IXB9
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All DBs
Position
1:complement(472052..473530)
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AA seq
492 aa
AA seq
DB search
MEWIWISLIILIIFILVTFLVIFKKLNRSSKEEHSLLLQRLKLKEIELEQSYRLKIQEFE
QKSALENQQFQKYLDEIKKREEKLKTEEEKFTRKQRVQEKLIEQYTREREKLKIAFSQQL
GTSIEEIRKKLCEMIEDDLIDYKGKLIRKYENEAREEIRKKANYIIAQATTRYAGEFATE
RLINVITLPNDELKGRIIGKEGRNIKAIEMITGVDVIIDDTPSSIVLSSFNLYRRAIATK
LIEALVEDGRIQPSRIEEVYERISQEMEEQIMQDGEDTVLDLGLGYMHPELKKLIGKLKY
RASFGQNALGHSIEVARLAGIIAGELGGDAKMARRAGLLHDIGKSLTQELGGNHVDIGYE
LCLKYQESDIVLNAIKSHHGYEESMSIEAAAVCTADTLSAARPGARREALENFLQRAIEI
EELINQKLGVKQSYVINSGREIRVIIEAEILSDEASAVLAKEIAKEIEEGFQYPGEIKIN
VIREYRSIEYAK
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atggaatggatatggataagccttataatcttaattatctttatcctagtaacttttctt
gtaatctttaaaaaactcaatagatcttcaaaagaagaacactctcttttacttcaacga
cttaaacttaaagaaatagagttagagcaaagttatagactaaaaattcaagagtttgaa
caaaaatcagcccttgaaaatcaacaatttcaaaagtatctagatgagattaaaaaaaga
gaagaaaaattaaaaacagaagaagaaaagtttactagaaaacaaagagttcaagaaaaa
cttattgaacaatatacacgagaaagagaaaagttaaaaatagctttttcccaacagctt
ggaacctccattgaagagataagaaagaagctttgtgaaatgattgaagatgatttgatt
gactataagggaaagctcattcgaaaatatgaaaatgaagccagagaagagataagaaag
aaggcaaactatattattgctcaagctactacccgctatgctggtgagtttgcaacagag
cgcttgattaatgtaattactcttcctaatgatgagcttaaaggaaggattattggaaaa
gaaggaagaaatattaaagcaattgagatgattacaggggtagatgttattattgatgat
acaccctcaagcattgtgttaagttcttttaatctctatcgtagagctattgcaactaag
ctcattgaagcactggtagaagatggaagaattcaaccttcaagaattgaagaagtttat
gaaagaatttcccaagagatggaagagcagattatgcaagatggtgaggatactgtgctt
gatcttgggcttggatatatgcatccagaattaaagaagcttataggtaaattaaaatat
cgtgcaagttttggacaaaatgcacttggacattctattgaagtggcacggcttgcagga
ataattgcaggagagcttgggggtgatgcaaaaatggcacgaagagcaggtttgcttcat
gatattggaaaaagcttaacccaagaacttggtggaaatcatgttgatattggttatgag
ctttgtttaaaatatcaagaaagtgatattgtgcttaatgccatcaaatcccatcatggt
tatgaggagtcaatgagtatagaggctgctgctgtttgtacagctgatacactttctgct
gctcgtcctggtgcaagaagagaagctttggaaaattttttacaaagagccattgagatt
gaagagctcattaatcaaaagcttggagtcaaacagtcttatgtgattaactcaggaaga
gagattagagtgattattgaggctgaaattttaagcgatgaagcaagtgcggttttggct
aaagaaattgccaaagagatagaggagggatttcaatatccaggtgaaattaaaattaat
gtcattagagaataccgttctattgaatatgcaaaatag
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