Helicobacter cholecystus: NCTC13205_00867
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Entry
NCTC13205_00867 CDS
T06600
Symbol
yjcD_1
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
hcl
Helicobacter cholecystus
Pathway
hcl03420
Nucleotide excision repair
hcl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hcl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NCTC13205_00867 (yjcD_1)
03430 Mismatch repair
NCTC13205_00867 (yjcD_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hcl03400
]
NCTC13205_00867 (yjcD_1)
Enzymes [BR:
hcl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NCTC13205_00867 (yjcD_1)
DNA repair and recombination proteins [BR:
hcl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NCTC13205_00867 (yjcD_1)
MMR (mismatch excision repair)
Other MMR factors
NCTC13205_00867 (yjcD_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_11
AAA_30
ResIII
DEAD
Motif
Other DBs
NCBI-ProteinID:
VEJ24714
LinkDB
All DBs
Position
1:912797..914842
Genome browser
AA seq
681 aa
AA seq
DB search
MPLSNLNPEQKQAATALLGHNLIIASAGTGKTSTIVGRIAHLLSIGIKPNEILLLTFTNK
ASNEMIERVGKYFGKEVAQNIEAGTFHSVAYRYLKEHFSVLLKQPRELKILFKSIYERRT
FLQKDPTPYSSQYLYDLYSLFLNSSQESFEHYLEKKTPAQLVYLPIYEGIFEEFNALKRE
YHYVDYNDLLLLYKEEMCKLTSHSQCPYAEILCDEYQDTNPLQESILHALKPQSLFCVGD
YDQSIYAFNGADISIIANFTQTYPSAQVFTLVKNYRSTAAILDLANRVISKNQRIYPKNL
EVFKQGEAQEPKLLEYNELFEQYQGIAKKIAMGRCNYSDIAIIFRNNSSADGIEASLREM
GVNSKRKGGSSFFESKEIVLLLDLLSCFFNPKDMMAYIHALSYGKGIGNSIAKDIYEGLA
VLGEGNIIQGLLSPNDRPPYTPKAKQSQAGLFDDLFMLENRARFDFALSKEFASHPILEH
PKLNIEGCKFLNEFYILFKQSKMLKNPTKLIDAISTSTFFKEIIQTLAKERSKNKDGSFD
ENRKNEALERIYRKIELLKNLSTPYENLGRFLNAMILGGAEASEGSGVNLLSIHASKGLE
FEEVYVIDLMDGRFPNTKLMSKGGSLDEERRLFYVAVTRAKEKLYLSYAKKDAIKDIEYT
PSIFLYEAGMIKGRITPLENN
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgccattatctaatcttaatcccgaacaaaagcaagctgctactgctttactgggacat
aaccttatcattgcctcagcaggaacaggtaaaacttctacaattgttggacgtattgca
cacttactttctattgggattaaacctaatgaaatcttacttttaacttttaccaataaa
gcaagcaatgaaatgattgagcgcgtaggaaaatattttggtaaagaagtggcccaaaat
attgaagcagggacatttcattccgtagcctatcgttaccttaaagagcatttttctgtt
cttcttaagcaaccccgggaactcaaaatcctttttaaaagcatctatgagcgtcggaca
ttcttgcaaaaagatcctacgccctactcctctcaatacctctatgatctctactctctg
tttttaaactcttctcaagaaagttttgaacactatttagaaaaaaaaactcctgcacaa
cttgtatatctccctatttatgagggaatttttgaagaatttaatgcactcaaaagagag
tatcactatgtggactataatgacttgctcctgctttataaagaagaaatgtgcaagctt
accagccattcccaatgcccttatgctgagattttatgcgatgaatatcaagatacaaat
cctctccaagaatctattctccatgccctaaagcctcaaagtctcttttgtgtaggggat
tatgatcaaagtatttatgcctttaatggtgcggatatttccattattgccaactttact
caaacctatcctagcgcacaagtttttactcttgtcaaaaactaccgctccactgctgct
atacttgatttagctaatcgtgttatcagtaaaaatcaaagaatctatcctaagaatcta
gaggtctttaaacaaggagaagctcaagaacccaaacttttagaatacaatgagcttttt
gaacaatatcagggtattgccaaaaaaattgctatgggaagatgtaattattcagatatt
gccattatttttcgcaacaattcaagtgccgatgggattgaggcaagtctaagggaaatg
ggagtaaattctaaacgtaaaggggggagtagtttttttgagagtaaggaaattgtgctt
ttactcgatttgctctcatgtttttttaatcctaaggatatgatggcctacattcacgcg
ctcagttatggcaagggaataggaaactcgattgctaaagatatttatgaaggccttgca
gttttaggagagggtaatattattcaaggtttgctttctcctaatgatagacctccctat
acccctaaagccaaacagagtcaggccggactttttgatgatctctttatgctagaaaat
cgtgcaagatttgattttgctttaagcaaagaatttgcttcacatcccattttagaacat
cccaagctcaatattgaaggatgtaaatttcttaatgaattctacatcttatttaaacaa
tccaaaatgcttaaaaaccctacaaaacttattgatgcaatcagcacaagcacttttttt
aaagaaattatccaaaccttggccaaagagcgttcaaaaaacaaagatggaagctttgat
gaaaatcgtaaaaatgaggctttggaacgaatctatcgtaaaattgaacttcttaaaaac
ttaagcaccccctatgaaaacttgggaagattccttaatgctatgattttaggaggagct
gaagcaagtgaggggagcggggtcaatcttctttccattcatgcaagcaagggactagaa
tttgaagaagtgtatgtgattgatcttatggatggacgtttccccaatactaaacttatg
agtaaaggggggagtttagatgaggaaagaaggcttttttatgtggcagtaacacgggca
aaagagaaactttatctaagttatgccaaaaaagatgcaattaaagatattgaatatacc
ccctctattttcctctatgaagcaggaatgatcaaggggagaattactcccctggaaaat
aattag
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