Helicobacter cholecystus: NCTC13205_01231
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Entry
NCTC13205_01231 CDS
T06600
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
hcl
Helicobacter cholecystus
Pathway
hcl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hcl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NCTC13205_01231 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hcl03400
]
NCTC13205_01231 (uvrB)
DNA repair and recombination proteins [BR:
hcl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NCTC13205_01231 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NCTC13205_01231 (uvrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
Helicase_C
UvrB
ResIII
UVR
DEAD
AAA_30
UB2H
SWI2_SNF2
Kinesin
AAA_22
MCM5_C
T2SSE
UBA
Motif
Other DBs
NCBI-ProteinID:
VEJ25944
LinkDB
All DBs
Position
1:complement(1253530..1255503)
Genome browser
AA seq
657 aa
AA seq
DB search
MKAFELNSSYTPSGDQPQAIEKITNSILRGHRYQTLIGVTGSGKTFSMANIIAKLNMPTL
IMTHNKTLAAQLYSEFKGFFPNNHVEYFISHFDYYQPEAYIPRRDLFIEKDSSINEDLER
LRLSATTSLLAYDDVIVVASVSANYGLGNPEEYLQMIEKLEVGMQISQKTLLQKLVEMGY
TRNDTIFERANFRVMGESIDIFPAYNEGEYIRLEFFGDEIEKISIREALSNTLFKSIPSY
VLYAANQFIVGGDRLSLAIKSIEDELALRLEEFASQDKMVEHSRLKSRTEFDLEMIAQSG
ICKGIENYARHLTGKKPGETPYSLLDYFEQKGKPYLIIVDESHVSLPQFGGMYAGDRSRK
EVLVEYGFRLPSALDNRPLKFDEFIIKPPHFLFVSATPAHKELELSGENIAEQIIRPTGL
LDPLYEIRDSQNQVLDLLEEIKLRIEKKERVLITTLTKKMAEELSKYYADMGIKIQYMHS
DIDAIERNHLIRSLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQT
MGRAARNVNGKVLLYAQKITNSMKKACEITDYRRAKQMQYNALHNITPKSVQRQVEDELK
LESSANLYEKRVKNKIPKSELENIIKELKAKMLEASKKLEFEEAARLRDEIARLRGK
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcttttgaactcaactcttcttatactccctcaggggatcaacctcaggcgatt
gagaaaatcacaaattctattttacgtggccatcgttaccaaacccttattggtgtaaca
gggagtggaaaaaccttttctatggcaaatattattgccaaactcaatatgcccactttg
attatgactcataataaaactttggccgcccagctttatagtgagtttaaaggttttttc
ccaaacaatcatgtggagtattttatttctcactttgattattatcaaccagaagcctat
attccacgtcgggatctttttattgaaaaggacagctctatcaatgaagatttagagcgt
cttagactctcagccaccacttcacttcttgcttacgatgatgtgattgttgttgcaagt
gtttcagcaaattatggtttaggaaatcctgaggaatacctccaaatgatagaaaaacta
gaagtaggaatgcaaatctctcaaaaaactctccttcagaaacttgtagaaatgggttat
acacgaaatgacactatttttgaaagagcaaattttagagttatgggggagagcattgat
atttttccagcctataatgaaggggaatacatacgtcttgagttctttggagatgaaatt
gaaaaaatttctatcagggaagcattaagcaatacactctttaaatccattccctcttat
gtgctctatgctgctaatcaatttattgttgggggtgatcgactttctttggcaattaag
agtattgaagatgagcttgctttaagacttgaagaatttgcctcacaagataaaatggtc
gagcactcaagattaaaaagtcgcaccgagtttgatctagagatgattgctcaaagtggg
atatgtaaggggatagaaaattatgcacgccatctcacaggaaaaaaaccaggagaaacc
ccctactccctgcttgattattttgaacaaaaaggaaaaccctacctcatcattgtcgat
gagtcccatgtcagtcttccacaatttggcgggatgtatgcaggagatagaagcaggaaa
gaagtgcttgtagaatatggttttagacttcctagcgcactggataatcgacctttaaag
tttgatgaattcattattaaacccccccattttctctttgtctctgccactccagcccat
aaagaactagagctaagcggagaaaatatagccgagcaaatcattcgacctacaggactt
cttgatccactttatgaaatccgcgacagtcaaaatcaagtgcttgatctcttagaagaa
attaaacttagaatagaaaaaaaagaacgtgtgctcattacaacgctcactaaaaaaatg
gctgaagaactcagtaagtattatgcagatatggggattaaaatccagtatatgcacagt
gatattgatgccatagagagaaaccatcttattcgctctcttagacttggagagtttgat
gtgcttgtaggaatcaatcttttgcgtgagggactagatctacctgaagtaagccttgta
gcaatcttagatgcagataaagaaggatttttaagaagtgaaactagccttattcaaact
atggggcgggcagcaaggaatgtaaatggcaaagttctcctctatgctcaaaagattaca
aactctatgaaaaaagcttgtgaaattactgattatcgtcgggctaaacaaatgcaatac
aatgcactccacaatatcacccccaaaagtgtgcagcgtcaggtcgaagatgagctcaag
cttgaaagcagtgctaatctttatgaaaaaagagtcaaaaataaaattcccaaaagtgaa
ttagaaaatatcatcaaagagctcaaggcaaaaatgcttgaagcaagtaaaaagctagag
tttgaagaagcagcaagacttagagatgaaatagcaagacttagagggaaataa
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