Helicobacter cholecystus: NCTC13205_01236
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Entry
NCTC13205_01236 CDS
T06600
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
hcl
Helicobacter cholecystus
Pathway
hcl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hcl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NCTC13205_01236 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hcl03021
]
NCTC13205_01236 (rpoA)
03400 DNA repair and recombination proteins [BR:
hcl03400
]
NCTC13205_01236 (rpoA)
Enzymes [BR:
hcl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NCTC13205_01236 (rpoA)
Transcription machinery [BR:
hcl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NCTC13205_01236 (rpoA)
DNA repair and recombination proteins [BR:
hcl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NCTC13205_01236 (rpoA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
TRAPP
RNA_pol_L_2
Prenyltransf
Motif
Other DBs
NCBI-ProteinID:
VEJ25954
LinkDB
All DBs
Position
1:1257258..1258262
Genome browser
AA seq
334 aa
AA seq
DB search
MKTIKTTPYIPTDIAVEEVGQNHIKITAHPFESGYAITFAHPIRRLLMSSSVGFAPIGVQ
IEGVAHEFDSIRGIVEDVSQLIVNLKNIRFLIQEKEGEDPIKLSYSFKGSRSLKAGDFRS
EGVEITNPDLHIATINEGAELNLSILIQNGIGYVPSEDIRGILPEGFIPLDAFFTPVKKV
TYEIASVLVEDNPNYEKIIFDIQTDGQIEPMQAFRNAITIMHSQMSVFGADLSLAAPAFS
SKNLAEDSAELKTLMIRIDSLNLSARCFNCLDRANIRHIGELVMMEESALKAIKNLGKKS
YDEITEKLEELGYPVGTKLSDNLIALFEKKISKK
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacgataaaaactactccatatattccaacagatattgctgttgaggaagtgggt
caaaatcatatcaagatcactgcccatccttttgagtcagggtatgcaatcacttttgcc
catccaattcgaagacttttgatgtctagctcagtaggatttgctcctattggagttcaa
attgagggtgttgcacacgagtttgattcgattcgtggaattgttgaggatgtttctcaa
cttatcgtcaatcttaaaaatattcgctttcttatccaagaaaaagaaggtgaagacccc
attaaattaagctatagctttaagggatctagaagtcttaaggctggagattttagaagt
gagggtgttgagattacaaatcctgatttacatattgcaacaatcaatgagggtgcagaa
cttaatttaagcattttgatccaaaatggtatcggttatgttccaagtgaagatattcgt
ggaatattgcccgaaggatttattccacttgatgctttctttacacctgtaaagaaagta
acttatgaaattgcaagtgttttggttgaagataatccaaactatgaaaaaattattttt
gatattcagacagatggacaaattgaacctatgcaagcatttagaaatgctattacaatt
atgcattctcaaatgtctgtttttggtgctgatctttctttggcagctcctgcattctca
tcaaagaatcttgctgaggatagtgcagagcttaagactttgatgatccgcattgattct
ctaaacttaagtgcaagatgttttaattgtcttgatcgtgcaaatatcaggcatattggc
gaacttgtcatgatggaagagagtgctttaaaagcgattaaaaatttaggtaaaaaatcc
tatgatgaaatcacagaaaaacttgaagagttgggttatccagtaggaacaaagctctca
gataatctgattgctctttttgaaaagaaaatcagcaaaaaataa
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