Helicobacter cholecystus: NCTC13205_01266
Help
Entry
NCTC13205_01266 CDS
T06600
Symbol
uvrA
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
hcl
Helicobacter cholecystus
Pathway
hcl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hcl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NCTC13205_01266 (uvrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hcl03400
]
NCTC13205_01266 (uvrA)
DNA repair and recombination proteins [BR:
hcl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NCTC13205_01266 (uvrA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NCTC13205_01266 (uvrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
ABC_tran
UvrA_DNA-bind
SMC_N
AAA_29
RsgA_GTPase
nSTAND1
nSTAND3
AAA_16
DnaJ_CXXCXGXG
AAA_25
AAA_21
AAA_15
APS_kinase
AAA_33
Viral_helicase1
RNA12
Pigment_DH
Motif
Other DBs
NCBI-ProteinID:
VEJ26015
LinkDB
All DBs
Position
1:1286982..1289786
Genome browser
AA seq
934 aa
AA seq
DB search
MSEYITITGAKENNLKNINLSLPKNKLIVFTGLSGSGKSTLAFDTLYAEGQRRYIESLSS
YARQFLDKVGKPNVDKIEGLTPAIAIDQKTTSKNPRSTVGTITEIYDYLRLLYARVGKQH
CHLCGNPISHMTQGDIINQVLSLPKESKLILLSPIIKEKKGSFTEKIESLRQKGYVRAYI
DGVMVRLDEEITLSKTKKHTIKAIIDRVVLNDDNHTRIAQGVEKALRESYGEVEIEVLND
EGSKFLHFSEHFACFDCKVSFEPLEPLSFSFNSPKGACEDCGGLGMKYSIDIKKILNASI
PLNEGAIKFIFGFNRGYYNMLFEGFCKANKIDVSKSFEELSSQEQKALLYGNSVEVELTW
RGSKLVRPWQGIMQIAYDLFKDEKDLADFMSEKVCPSCKGHRLKPQSLAVKVAGKGIADV
LDMPLQECYEFFINEENFSYLTDQEQLIASSIFKEIRERLFFLYDVGLGYLTLGRDARTI
SGGESQRIRIASQIGSGLTGVMYVLDEPSIGLHERDTLKLIRTLRSLQEKGNTVIVVEHD
KETIMQADYIVDIGPRAGVNGGEVIFAGNVEELLKQNTLTAQYINGNKQISYPHNRPQEK
FIQIQNVNINNIKNLSVKIPLSNFVCITGVSGSGKSSLILQTLLPVAQELLNHSKKIQKC
DGVSILGLEQLDKVIYLDQSPIGRTPRSNPATYTGVMDDIRALFSEVKEAKIRGYNMGRF
SFNVKGGRCEKCQGEGEIKIEMHFLPDVMVKCDSCNGSRYNAQTLEILYKDKSIADVLNM
SVDEALLFFSKLPKIAQKLQTLQDVGLGYITLGQNATTLSGGEAQRIKLAKELSRKDTGK
TLYILDEPTTGLHFADVDRLTKVLHHLVGLGNSAIVIEHNLDMIKNADYIIDIGPEGGDK
GGKIVDMGSVKHIAKNAKKSGSYTGAFLAKELGC
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaatatatcactattacaggtgcaaaggaaaataatcttaaaaatatcaatctc
tctcttcctaaaaataagttgatcgtttttacaggtttaagtggaagtggaaaaagcaca
cttgcctttgacactctttatgctgagggtcaaagacgctatattgaatctctctcaagc
tatgctaggcagtttttagataaagtgggaaaacctaatgttgataagattgaagggctt
acccctgcaattgctattgatcaaaaaaccacatctaaaaatccacgctctaccgttgga
acaattactgaaatttatgactatcttagacttttatatgcaagagtgggcaagcaacat
tgccatttatgcggtaaccctatttcacatatgacacaaggtgatattatcaaccaagtt
ctctcacttcctaaagaaagtaagcttattcttctctcccccatcattaaagaaaaaaaa
ggaagctttactgagaagattgaatctttacgacaaaagggttatgtgagagcgtatatt
gatggagtgatggtgcgattagacgaagagattacattaagcaaaaccaaaaaacatacc
attaaagccattattgacagggtggtgcttaatgatgataatcacacacgtattgcacag
ggagtagaaaaagcccttagagaatcttatggagaagtagaaattgaggttttaaatgat
gagggatcaaagttcttgcatttctcagagcattttgcttgttttgattgtaaagtgagt
tttgaaccattagagcccctaagtttttcttttaactctcctaaaggggcatgcgaggat
tgtgggggattgggaatgaaatacagtattgatattaaaaagattctcaatgcctctatt
cctcttaatgagggggcaattaaatttatttttggttttaatcgagggtattacaatatg
ctctttgagggcttttgcaaggcaaataaaatcgatgtgagcaagagttttgaagaactt
tcttcccaagagcaaaaggcattactttatggtaatagtgtagaagtggaacttacttgg
agggggagtaaattggtgcgtccttggcaggggattatgcagattgcctacgatcttttt
aaagatgaaaaagacttggcagattttatgagtgaaaaggtctgccctagttgcaaaggc
catagattaaaaccccaatctcttgcagtcaaggttgcgggaaaagggattgcagatgta
ttagatatgcctttgcaagagtgttatgagttttttatcaatgaggaaaatttctcttat
cttacagatcaagagcaactcattgcttcatctatctttaaagaaattcgtgagagacta
tttttcctttatgatgtaggattaggctatcttactcttggaagagatgcaagaaccatt
agtggaggggaaagccaaaggattagaatcgcttctcagattggaagtggacttacgggg
gtaatgtatgttcttgatgagccaagtattgggctacatgaaagagatacactcaaactt
atccgcacccttagaagcttacaagaaaaaggcaatacagttattgttgtagagcatgat
aaagagacaattatgcaggcagactatattgtagatattggtcctagggcaggagtgaat
ggtggagaagtgatttttgcaggaaatgtagaagaacttcttaaacaaaataccctcact
gctcagtatatcaacggcaataagcaaatctcttatccacacaatcgccctcaagaaaaa
tttatccaaattcaaaatgtcaatatcaataacattaaaaaccttagtgtcaaaattccg
ctctcaaactttgtgtgtatcactggagtgagtggaagtggaaaaagctcactcattctt
caaacccttttacctgttgcccaagagcttcttaatcatagtaagaagattcaaaaatgc
gatggtgtaagcattttgggacttgagcaacttgataaagttatttatttagaccaaagc
cctattggaagaactccgcgcagtaatcctgcaacctatacaggagtgatggatgatatt
cgagcgcttttttcagaagttaaagaagcaaaaattcgcggatacaatatgggacgcttt
agctttaatgttaagggtggaagatgtgagaaatgccaaggtgagggagaaattaaaatt
gaaatgcattttttgcctgatgtaatggtcaaatgcgatagttgtaatggaagtcgttat
aatgcccaaactcttgaaatcctctataaagacaaatcaattgcagatgtgctgaatatg
agtgtggatgaagcattgttatttttctctaagcttccaaaaattgcccaaaaacttcaa
actcttcaagatgtaggactgggctatatcaccttaggacaaaatgcaacaaccctaagt
ggaggagaagcccaaaggattaaacttgccaaagagctttcacgcaaagatacaggaaaa
actctctatattcttgatgagcctacaacaggactgcattttgcagatgtggatcgactg
acaaaagttttacatcatcttgtaggattgggtaattctgcaattgtcattgagcacaat
ctggatatgattaaaaatgcagactatattattgatattggtcctgaggggggtgataaa
ggaggaaaaattgtggatatgggaagtgtcaaacatattgccaagaatgctaaaaaaagt
ggaagctatacaggagcattccttgcaaaagagctaggatgttaa
DBGET
integrated database retrieval system
