Helicobacter cholecystus: NCTC13205_01337
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Entry
NCTC13205_01337 CDS
T06600
Symbol
rfaL
Name
(GenBank) O-antigen polymerase
KO
K02847
O-antigen ligase [EC:
2.4.99.26
]
Organism
hcl
Helicobacter cholecystus
Pathway
hcl00540
Lipopolysaccharide biosynthesis
hcl01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
hcl00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00540 Lipopolysaccharide biosynthesis
NCTC13205_01337 (rfaL)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
hcl01005
]
NCTC13205_01337 (rfaL)
Enzymes [BR:
hcl01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.99 Transferring other glycosyl groups
2.4.99.26 O-antigen ligase
NCTC13205_01337 (rfaL)
Lipopolysaccharide biosynthesis proteins [BR:
hcl01005
]
Core region
NCTC13205_01337 (rfaL)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Wzy_C
DUF3188
zf_PCFS4
Motif
Other DBs
NCBI-ProteinID:
VEJ26153
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All DBs
Position
1:1370778..1372085
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AA seq
435 aa
AA seq
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MMVSLGLVLSLLLGFLYLSAFWRQGSFTAMILCLIALLITFLFSHNTPKYRMCKNERLFA
WALLCFFLSALASFLIGHGYELKSIKHPNMPSFLDIDLASKYLMGSLLFVLFFKLKFTLQ
KRIIFYSIALGGIICGIFAAYQRYVLGLQRVHGMSGIAEFADESAILCILCMMIFSFFAK
RGERFLFALSIFASSFALLSTSTRGAFLGIILTILMFLSLVWIYQKAFIKKALWASLFCA
MGFVCILFFTSGIEDGLRVKSAVNDVKYYDQGNVNTSIGLRFEMWKEAIAMFKMAPFFGL
STYEISQNLKEIRERSGSQIPRDQESDARNEAIGNKHNQILNALAKRGIVGVLALLFVWF
AYGKLFYSFLKVRQFEVFAFALCALLIGFYYLFPNSLTGDVWESNVSVPLMILSVCCFYK
LILQEINILQESNNA
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgatggtttctttgggtttagttttaagtttattgttaggatttttgtatttgagtgct
ttttggcgtcagggtagttttactgcaatgattttgtgtctcattgctttgctcattact
tttttgttttcgcacaacacccctaaatatagaatgtgtaaaaatgaaaggctttttgca
tgggctcttttatgtttctttttaagtgctctggcttcttttttaattgggcatggttat
gagcttaaaagtattaaacatccaaatatgccttcatttttggatattgatttggcaagt
aaatatttaatgggcagtctattatttgtattattttttaaattgaaatttacattgcaa
aaaaggattattttctattccatagcactaggggggattatttgtgggatttttgcggct
tatcaaagatatgttttgggattgcaaagagtgcatggaatgagtggaattgcagagttt
gcagatgagagtgctattctttgtatcctttgtatgatgattttttctttttttgcaaaa
aggggggaaagatttttatttgcactgagtatatttgcctcttcttttgcattgctttca
acaagtacaagaggtgcatttttgggaattattttaacaatacttatgtttttgtctctt
gtatggatctatcaaaaggcatttattaaaaaagccttatgggcaagtttattttgtgct
atggggtttgtttgtattttgttttttacaagtgggattgaagatggtttaagagtaaaa
tctgcagtcaatgatgtaaagtattatgaccaaggaaatgtgaatacaagtattgggcta
aggtttgagatgtggaaagaagcgattgcaatgtttaaaatggctccattttttggatta
agtacttatgaaatttctcaaaatttaaaagagattagagaaagaagtggaagccagatt
cctagagatcaagagagcgatgcaagaaatgaagccataggcaataagcataatcaaatt
ttaaatgccttagcaaaaaggggaattgtgggtgtgcttgcacttttatttgtttggttt
gcttatggcaaactgttttattcttttttaaaagtgagacaatttgaagtctttgcattt
gcgctttgtgcattattgattggtttttattatttatttcctaattcactcacaggtgat
gtatgggagtcaaatgttagcgttccgttgatgattcttagtgtttgttgtttttataaa
cttattttgcaggaaataaatattttgcaggagagcaacaatgcttaa
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