Helicobacter cetorum MIT 99-5656: HCD_00350
Help
Entry
HCD_00350 CDS
T02033
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
hcm
Helicobacter cetorum MIT 99-5656
Pathway
hcm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hcm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HCD_00350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hcm03019
]
HCD_00350
03016 Transfer RNA biogenesis [BR:
hcm03016
]
HCD_00350
Enzymes [BR:
hcm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HCD_00350
Messenger RNA biogenesis [BR:
hcm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HCD_00350
Transfer RNA biogenesis [BR:
hcm03016
]
Prokaryotic type
tRNA degradation factors
HCD_00350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNR_1st
OB_RNR_2nd
Motif
Other DBs
NCBI-ProteinID:
AFI05102
UniProt:
I0EQ83
LinkDB
All DBs
Position
complement(72457..74382)
Genome browser
AA seq
641 aa
AA seq
DB search
MQGFLRSLFFGVKGIPKKFAPLVERGVLKEVVDFKNQRYILKEGFEIARVQRVHKNKAFL
ISLARSYPKDPLIRNLPHSLDSNAIILCAIKPHKNRPIAFFKAVITDEAPFMLGYLAKKN
NQIIALSFKEPFKKALVLKHSQKSLLGLPRNCVVKIDTKKRKISEILGALEDPLLDENLS
LSLFDRIKDFSKDCLNLAHHYAQIKATDFKNRINYSRIPFITIDPKDAKDFDDAIFYDRE
KNVLFVAIADVSEFVPKHSSLDTEARLRGFSVYFPNSVYPMLPLSLSQGACSLKAKEKRL
ALVYEIPLNALENAQLFQGIIEVRANCSYEEINHFLSHKKSSLSKELQKSLLGFLEVALK
LKDKRLKKGFDFNAFENKLYLNEEGRIEKIEIEKASYAHTLIEEAMLLANQSSARLLDRH
FHNKGIYRIHKEPSLEQQKRLYAKLFDYDIIRPKNMGFFPFLEYALKVAKEKKLEREVAR
LIIKSQNEALYSFTQESHFGLGFFSYTHFTSPIRRYSDLALHRLLKELLFHQAKGCSYLL
EEMPPLCSELNALQKKVALIERDFVKRKYTRLALEHLEEEFQGIVLEIKDEVVVGLEGKL
VGLKVLVKTPKTFRVLEKVRVKITHADLVLGQVKGEIIERI
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgcaagggtttttaagaagtctgttttttggggttaaaggtattcctaagaaattcgct
cctttagtagaaaggggtgttctaaaagaagtggttgattttaaaaatcaacgctatatt
ttaaaagaaggctttgaaatcgctagagttcaacgagtgcataaaaataaggcgttttta
atctctttagctagaagctatcctaaagacccattaattaggaatttgccccattctttg
gatagtaacgctattatcttatgtgctattaagccccataaaaaccgccccatagctttt
tttaaagccgttatcactgatgaagcaccttttatgctaggttacttagctaaaaaaaat
aaccaaatcatcgccctttcctttaaagagccttttaaaaaagcccttgttttaaaacac
agccaaaaatccttattaggactgcctagaaattgcgtggtaaaaattgacactaaaaag
cgtaaaattagtgaaattttaggggctttagaagaccctttgctagatgaaaacctttct
ttaagtctttttgatagaatcaaggatttttcaaaagattgtttgaatttagcccaccat
tatgcacaaattaaagctacagattttaaaaatagaatcaattactctcgcattcctttc
attacgattgacccaaaagatgccaaagattttgatgatgcgattttttatgaccgagaa
aaaaatgtcttgtttgtagctattgctgatgtgagcgaatttgtgccaaaacattcaagc
ttagatacagaagctaggcttaggggctttagcgtgtattttcctaatagtgtctatccc
atgcttcctttgagcctgtctcaaggggcatgttcattaaaggcaaaagaaaaacgctta
gctttagtgtatgaaattcctttgaatgcattagagaacgctcaattgtttcaaggtatt
attgaagttagagctaattgtagttatgaagaaatcaatcattttctaagccataaaaaa
agctcattgagcaaagaattacaaaaaagccttttggggtttttagaagttgctttaaag
ttaaaagataagcgtttaaaaaaggggtttgatttcaatgcgtttgaaaacaagctttat
ttgaatgaagaagggcgtatagaaaagattgaaatagaaaaagcaagctacgcacacacc
cttatagaagaagctatgctactagctaatcaatctagtgcgagattattagatagacat
tttcacaataaggggatataccgcatccacaaagagccaagtttagagcaacaaaaacgc
ctttatgctaagctttttgactatgacattattcgccctaaaaacatggggttttttcca
tttttagaatatgccctaaaagtggcgaaagaaaagaaattagaaagagaagttgcacgc
ttgataatcaaatctcaaaatgaagcactctatagtttcactcaagaaagccattttggt
ttagggttttttagctatacgcatttcacttcacccattagaaggtatagcgatttagcc
ttacataggcttttaaaagaattgttgtttcatcaagctaaaggttgctcgtatttgcta
gaagaaatgccccccttatgctccgaattaaacgctttacaaaaaaaggtcgctttaatt
gaaagggattttgtcaaacgcaaatacactcgcctagccttagagcatttagaagaagag
tttcaaggtattgttttagagattaaagatgaagtggttgtaggattagaaggaaagctt
gtaggactaaaagtcttagtaaaaaccccaaaaacttttagagtgttagaaaaagtgcgt
gttaaaatcacgcatgctgacttagttttaggacaagttaaaggcgaaatcatagaaagg
atttag
DBGET
integrated database retrieval system
