Helicobacter cetorum MIT 99-5656: HCD_02095
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Entry
HCD_02095 CDS
T02033
Name
(GenBank) single-stranded-DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
hcm
Helicobacter cetorum MIT 99-5656
Pathway
hcm03410
Base excision repair
hcm03430
Mismatch repair
hcm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hcm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HCD_02095
03430 Mismatch repair
HCD_02095
03440 Homologous recombination
HCD_02095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hcm03400
]
HCD_02095
DNA repair and recombination proteins [BR:
hcm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
HCD_02095
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
HCD_02095
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HCD_02095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Fe-S_biosyn
Motif
Other DBs
NCBI-ProteinID:
AFI05443
UniProt:
I0ER74
LinkDB
All DBs
Position
437536..439083
Genome browser
AA seq
515 aa
AA seq
DB search
MKQKLKAQIKEQVASIAYDKGFPSPFLFKDLKKGALKIIEAIKTHTEILVVGDYDADGII
SSTIMAKFFASLGYGHVRFAIPNRFIDGYGISKKFLEKHHAPLIITVDNGISAFEAADFC
KEKNYTLIITDHHCLHNNEVPNAYAVINPQQPDCAFVQKEVCGALVAFYLCYGIHKLLEK
EKSHSSELLCLAGVATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQKEVFRKRSL
KASDISFNIAPLINSAGRMQDPKLALDFLNTNNMQDCYSLYERLKTCNLERKIIQQQVFE
EAYERAMIGKKIVVAFKDNWHEGVLGIVASKLVEATQKPSLVLTFKDGVYKGSGRSSQNI
DLIDALCGVSSLLLGYGGHRQACGLSIEKENLVLLFETLESFDFKVLPTHEKETPLKLRL
KDIDKELLEIIELGEPYGQENPEPLFKAQNLEVIEEKIVKESHQILRFRDNECVKDAIYF
CAERFLKVGEKVSVLFSVELDEYSNEPKMFVKSLL
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaaaagcttaaggctcaaatcaaagagcaagtggcttctatcgcctatgataaa
gggtttcctagcccctttttgtttaaagacctaaaaaagggagcgctcaaaatcatagaa
gcgataaaaacgcatacagagattttagtagtgggcgattatgatgcagatggcatcatt
agctctacgattatggcaaaattttttgcgagtttgggctatgggcatgttcgttttgct
attcctaatcgcttcattgatggctatggaatttctaaaaaattcttagaaaaacaccac
gcccccttgattatcacggtggataatggcattagtgcctttgaagctgcagatttttgt
aaagaaaaaaattacactctcatcattacagaccatcattgcttgcataataatgaagtg
cctaatgcctatgcagtgattaacccccaacaacctgattgtgcttttgtgcaaaaagaa
gtgtgcggcgccttagtggcgttctatttatgctatggcattcataaacttttagaaaaa
gaaaaaagccattctagcgaattattgtgcctagctggagtggctacaattgctgatatg
atgcccctaacctttttcaaccgctttttagtttctaaagccttgtattttttacaaaaa
gaatctttaggggctatggggttcttgcgtcaaaaagaagtttttagaaaacgctctttg
aaagctagcgatatttctttcaatattgcccctttaatcaactctgcaggccgtatgcaa
gacccaaaacttgccctagattttttaaacacaaataatatgcaagattgctactctttg
tatgaacgcttaaaaacatgcaatttggagcgtaaaatcattcaacaacaggtttttgaa
gaagcctatgagcgtgctatgattggtaaaaaaattgtcgtggctttcaaggacaattgg
catgaaggggtgcttggcattgtggcgtcaaaattagtagaagccactcaaaaacctagc
ctggttttgacctttaaagatggggtgtataaagggagtggtcgcagctctcaaaatatt
gatttaattgacgctctttgtggggtttcttctttattgcttggctatggggggcataga
caagcttgtggtttgagcattgaaaaagaaaatctagtgttactctttgaaaccttagaa
agttttgatttcaaagtattgcccacccatgaaaaagaaacccccctaaaactacgcctt
aaggatattgataaagagcttttagaaattatagaattaggcgaaccctacggacaagaa
aacccagaacctttatttaaagctcaaaatttagaagtcatagaagaaaagattgttaaa
gaaagccatcagattttgcgctttagagataatgaatgtgtgaaagatgctatttatttt
tgcgctgagcgatttttgaaagtgggtgaaaaagttagtgtgctttttagcgtggagtta
gatgagtattctaacgagcctaagatgtttgttaaaagtttattgtag
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