Helicobacter cetorum MIT 99-5656: HCD_02830
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Entry
HCD_02830 CDS
T02033
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
hcm
Helicobacter cetorum MIT 99-5656
Pathway
hcm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hcm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HCD_02830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hcm03400
]
HCD_02830
DNA repair and recombination proteins [BR:
hcm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HCD_02830
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HCD_02830
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
Helicase_C
UvrB
ResIII
UVR
DEAD
AAA_30
Microtub_bd
SWI2_SNF2
Kinesin
DUF87
T2SSE
AAA_7
AAA_22
TsaE
NB-ARC
Motif
Other DBs
NCBI-ProteinID:
AFI05584
UniProt:
I0ERL5
LinkDB
All DBs
Position
600841..602823
Genome browser
AA seq
660 aa
AA seq
DB search
MPLFELKSNYSPAGDQPQAIEKLTKSLKAKNQYQTLVGVTGSGKTYTMANIIAKVNKPTL
IMSHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLER
LRLSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGY
SRNEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSV
MLYAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATG
VCKGIENYARHFTGKLPGETPFCLLDYLGIFNREFLVIVDESHVSLPQFGGMYAGDMSRK
SVLVEYGFRLPSALDNRPLKYDEFINKNCQFLFVSATPNKLELELSKNNVAEQIIRPTGL
LDPNFEVRDSDKQVQDLFDEIKLVIERDERVLITTLTKKMAEELCKYYAEWGLKVRYMHS
EIDAIERNHIIRSLRLKEFDVLIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQT
MGRAARNANGKVLLYAKKITISMQKAFEITTYRRTKQEEFNKLHNITPKSVSRTLEAELK
LRDDETKIALAKALKKDKMPRSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAKLKTL
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atgcccttatttgaattaaaaagcaattattcaccagctggcgatcagccccaagcaata
gaaaagcttactaaaagcctaaaagctaaaaaccaataccaaactctagtgggcgttaca
ggaagtggtaagacttacacgatggcaaatatcatcgctaaagtcaataagcccaccttg
ataatgagccataataagaccttgtgtgcacagctctatagcgagtttaaggcgtttttt
ccacataatagagtggagtattttatatcccactttgattactaccagcctgagagctac
attcctagaagagatttattcattgaaaaagacagctctattaatgatgatttagagcgt
ttaagattaagtgcgaccacttcacttctaggttatgatgatgtgatagtcattgctagt
gtatcggctaattatggtttgggtaaccctgaagaatatttgaaagttatggaaaaaatc
aaagtgggcgaaaaacgagcctacaagagctttttattaaagcttgtagaaatgggctat
agtcgtaatgaagtggtgtttgatagggggagctttagagcgacaggtgaatgcgtggat
atttttccggcttataatgatgcagagtttattaggattgaattttttggcgatgagata
gagagaattgcggtatttgacgccctagaaaggaatgaaatcaagcgtttagattctgtc
atgctttatgcagccagtcagtttgcggttgggagtgagagattaaatttagccattaaa
agcattgaagatgagctggctttaagattgaaattttttaaagagcaagataaaatgctt
gaatacaaccgccttaagcaacgcactgagcatgatttagaaatgattagtgcgacaggc
gtgtgtaagggcattgaaaattacgcacgccattttaccggtaaattgcccggcgaaacc
cctttttgtttgttggattacttggggatttttaatagggagtttttagtcattgttgat
gaaagccatgtgagtttgccccaatttgggggcatgtatgcaggggatatgagtagaaaa
agtgttttagtagaatatggctttagattgccgtctgctttggataatcgccctttaaaa
tacgatgaattcatcaataagaattgtcaatttctctttgtgtccgctacgcctaataaa
ctagaattagagctttctaaaaacaatgtcgcagagcaaatcattcgccctacagggctt
ttagaccctaattttgaagtgcgagatagcgataaacaagtccaagatttatttgatgaa
atcaagttagtaatagagagagatgaaagagtgctaattaccacactcactaaaaaaatg
gcagaagaattgtgtaaatactatgctgaatggggcttgaaagtgcgttatatgcatagt
gaaattgatgcgattgagagaaaccatattatccgctctttaaggcttaaagaatttgat
gttttaatagggattaatctcttaagagaagggctagacttacctgaagtttctttagta
gcgattatggacgcagataaagaagggtttttaagaagcgaaacaagtctcattcaaacc
atggggcgagctgcaagaaatgctaatggtaaggtcttgttatacgctaaaaaaatcact
ataagcatgcaaaaagcctttgagattaccacttatagacgcactaagcaagaagagttt
aacaaactccacaatatcactccaaaaagtgttagccgcactttggaagcggagctgaaa
ctaagagatgatgaaactaaaatcgcccttgctaaagctttgaaaaaggacaaaatgcct
agaagtgaaagagaaaaaatcatcaaagaattagataaaaaaatgcgagagtgtgcgaag
aatttggattttgaagaagctatgcgtttgagagatgaaatcgctaaattaaaaacgctt
taa
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