Helicobacter cetorum MIT 99-5656: HCD_03515
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Entry
HCD_03515 CDS
T02033
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
hcm
Helicobacter cetorum MIT 99-5656
Pathway
hcm02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hcm00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HCD_03515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hcm03021
]
HCD_03515
Transcription machinery [BR:
hcm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HCD_03515
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_ner
WYL_3
Sigma70_r4_2
HTH_25
MCR_beta_N
Motif
Other DBs
NCBI-ProteinID:
AFI05719
UniProt:
I0ES00
LinkDB
All DBs
Position
745776..747719
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AA seq
647 aa
AA seq
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MKKKTDEEKKPKKAKQESKLKESKAKETKPIKKPSFNEELEELFANSLNDCISYESIIQI
SAKVPTLAQIKKIKELCQKYQKELVSSSEYAKKLNAIDRIKNTEEKQKVLEEELEDGYDF
LKEKEFLEWSRSDSPVRMYLREMGQIVLLSKDEEVELSKQIRLGEDIILDAICSVPYLID
FIYAYKDALINRERRVKELFRSFDDDDESSASDSKKDDDNDENEENEEGKKVVSEKDKKR
VEKVQESFKALDKAKKEWLKTLEAPVDEQEDELVRLLTLAYKRQMLKDRLYDLGPTSKLI
NELVKTMETTLKSGDGFEKELKRLEYKLPLFNDALVENHQKILANITHMTKDDIIAQVPE
ATMVSVYMELKKLFLTKEASEEGFDLDPNKLKEILEQIKRGKLISDRAKNKMAKSNLRLV
VSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEYEKGFKFSTYATWWIKQAISRAIADQA
RTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLDKVKNVIKVTKEPISL
EAPVGNDEDGKFGDFVEDKNVVSSIDHIMREDLKAQIDGVLDQLNEREKAVIRMRFGLLD
DESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNYLRI
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagaaaaccgacgaagaaaaaaaacctaaaaaagccaagcaagaatccaaactt
aaagagagtaaggctaaagaaaccaaacctatcaaaaagcctagtttcaatgaagaatta
gaagaattatttgcaaattccttgaatgattgcatctcttatgaatccattatccaaatc
agtgcgaaagttcccactctagcccaaatcaaaaaaatcaaggaattgtgccaaaaatac
caaaaagaattagtcagctcttcagaatacgctaaaaaactcaatgcgatagacagaatc
aaaaacactgaagaaaaacagaaagtcctagaagaagaattagaagacggctatgacttt
ttgaaagaaaaagagtttttagagtggagtagaagcgatagcccggtgcgtatgtatttg
cgtgaaatgggacaaatcgtgcttttaagcaaagatgaagaagtggagttgagcaagcaa
atccgtctgggcgaagatattatcttagatgcgatttgctcggtgccgtatttaattgat
tttatctacgcttataaagacgccctaatcaatcgtgaacgaagagtgaaagaactcttt
agaagctttgatgatgacgatgagtctagtgcaagcgattctaaaaaagatgatgataat
gatgaaaacgaagaaaacgaagaaggcaaaaaagtcgtttctgaaaaagataagaagcgt
gtagaaaaagttcaagagagctttaaagccctagacaaagccaaaaaagaatggcttaaa
acccttgaagcccctgtagatgagcaagaagatgagctagtgcggttattgactctagct
tataaacgccaaatgcttaaggacagactctatgatttaggtcccacaagcaaacttatc
aatgagctagtgaaaaccatggaaaccactctaaaaagtggcgatggatttgaaaaagaa
ttgaaacgcttagaatacaagctgcccttatttaatgatgcattagttgaaaaccaccaa
aaaatccttgctaatatcactcatatgactaaagatgatattatcgctcaagtgccagaa
gccactatggttagcgtgtatatggagcttaaaaaactctttttaaccaaagaagcgagt
gaagaaggctttgatttagaccctaacaagctcaaagagattttagagcaaatcaaaagg
ggaaaattaatttctgatagagctaagaataaaatggctaaatctaatttaaggctagtg
gtaagcattgccaaacgctttacaagcaggggcttacctttcttagacttgattcaagaa
ggtaatatcggcttgatgaaagcggtggataaatttgagtatgaaaaaggctttaagttt
tctacctatgcgacttggtggattaaacaagctatcagtcgtgccatagctgaccaagcc
cgcaccattcgtattcccattcatatgattgataccattaatcgcatcaataaagtcatg
cgtaagcacatacaagagaatggtaaagaaccagatttggaagtggtggctgaagaagta
gggctttcattagataaagttaaaaatgtgattaaagttactaaagagcctattagctta
gaagctccagtaggcaatgatgaagatggtaaatttggggattttgtagaagataaaaat
gtggtaagctccatagaccatatcatgcgagaagatttgaaggctcaaattgatggcgtt
ttagaccaattgaacgaacgagaaaaggcagtgattcgcatgcgttttggtcttttagac
gatgaaagcgataggactttagaagaaattggcaaagaattgaatgttacacgagagaga
gtgcgtcaaattgaaagctctgccattaaaaaacttagaagcccacaatatgggcgtatt
ctaagaaattatttgcgtatctga
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