Helicobacter cetorum MIT 99-5656: HCD_04330
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Entry
HCD_04330 CDS
T02033
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
hcm
Helicobacter cetorum MIT 99-5656
Pathway
hcm03420
Nucleotide excision repair
hcm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hcm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HCD_04330
03430 Mismatch repair
HCD_04330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hcm03400
]
HCD_04330
Enzymes [BR:
hcm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HCD_04330
DNA repair and recombination proteins [BR:
hcm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HCD_04330
MMR (mismatch excision repair)
Other MMR factors
HCD_04330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
PcrA_UvrD_tudor
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
AFI05880
UniProt:
I0ESG1
LinkDB
All DBs
Position
complement(900660..902687)
Genome browser
AA seq
675 aa
AA seq
DB search
MGFEKSILESLNDAQKAAVCHVQGAMLILAGAGSGKTKTLTSRLAYLIGVCGVPSENTLT
LTFTNKASKEMQERALKLLKNQILIPPLLCTFHRFGLLFLRQHMSLLKRACDFSLLDSDD
AKTLCKQLKITHYRESISKIKNRMISLDTQDRECYKAYERYQNALERDNLVDFDDLLVLS
LKILQDNLKLAKETSERYHYIMVDEYQDTNALQFEFLKTLSFTHNNLCVVGDDDQSIYGF
RGADISNILNFSKHYEGAKVVKLETNYRSSAEILECANSLISHNQNRHNKTLKSFKGPHK
SVVCKEYLTQKEESLNVAYQIKALLNKGEDLEDIAILYRLNGLSRSVEESLNALNIPYRL
IGAVSFYERAEIKDALATMHLVAKESERFFVKRILNKPTRGIGKITQELIFSVLDHEELG
LEEALKKGVFKGKLSVKNEQVLKDFIAMIERLRDAFNVSVEKFCECFLEETNLLRSYEKE
DNYEERKGFVEELLGLVKEHFKTNPTHSLLDFLNESTLDVYSTDTSHKVSCMSVHMSKGL
EFKHVFVIGLEEGFFPHRGFNDYNDEDNLEEERRLAYVAITRAKEELQLSYVKERLYFGR
KTPCVPSLFLKEAKLLHKDDKKVSPIRVGDLVSHKIFGTGRVLAIEDSTKCMKVNFGGRI
QRVMQGFLEKVREGF
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgggatttgaaaaaagtattttagaaagcttaaatgatgcacaaaaagctgcagtatgc
catgttcaaggggcgatgcttatcttagctggggcaggaagtggcaagactaaaactttg
acaagccgtttggcttatttaatcggtgtttgtggcgtgcctagtgaaaacaccttaacg
cttacttttactaataaagcaagcaaagaaatgcaagaaagggctttgaaattattgaaa
aatcaaatccttattccccccttgctttgcactttccatcgttttggtttgttgttttta
agacagcacatgagccttttaaaaagggcgtgcgatttttctctgttagatagtgatgat
gctaaaacactctgtaagcaactcaaaatcacccattatagagagagcatttctaaaatc
aaaaaccgcatgataagtttagatacgcaagatagagagtgttataaagcttacgaacgc
tatcaaaacgccctagaaagagataacttagtagattttgatgatttgttggttctaagc
cttaagattttacaagataatttaaaattagctaaagagacaagcgaacgataccattat
attatggtagatgagtatcaagacacgaacgccctacaatttgagtttttaaaaacgctg
agttttacgcataataatttgtgtgtggtgggtgatgatgaccaaagtatttatggcttt
aggggggctgatatttctaatattttaaatttttctaagcattatgaaggggctaaggta
gtaaaactagaaacaaactaccgctcaagtgctgaaatcttagagtgtgcaaattctctc
attagccacaatcaaaaccgccacaataaaacgctcaagagttttaagggtccgcataaa
agcgttgtttgtaaagagtatttaacgcaaaaagaagagagtttgaatgtggcttatcaa
attaaagcccttttaaacaagggcgaagatttagaagatattgctattttgtatcgtttg
aacggacttagtcgtagcgttgaagagagtttgaatgccttaaacattccttacagactt
ataggggcggtgagtttttatgaaagggctgagattaaagatgcattagcaaccatgcat
ttagtggctaaagaaagcgaacgcttttttgtcaaacgcattttaaacaagcctactagg
ggtattggtaaaatcactcaagaactcatcttttctgttttagaccatgaagagcttggc
ttagaagaagcgttgaaaaagggcgtgtttaaaggtaagttgagcgttaaaaacgaacag
gttttaaaagattttatcgctatgatagagcgtttaagagatgcttttaatgtgtctgta
gagaagttttgcgagtgttttttagaagaaacaaatcttttgagaagctatgaaaaagaa
gacaattatgaagagagaaagggctttgtagaagagcttctaggcttagtcaaagagcat
tttaaaactaaccctacgcattccttattagattttttaaatgaaagcacgctagatgtt
tatagcacagatacttcgcacaaagtgagttgcatgagcgtgcatatgagtaagggttta
gaatttaaacatgtgtttgttattggcttagaagaaggcttttttccgcatagggggttt
aatgattataatgatgaagataatttagaagaagaaaggcgtttagcctatgtggctatc
actagggctaaagaagaattacaactctcttatgtcaaagagcgtttgtattttggtaga
aagaccccttgtgtgccgtctttatttctcaaagaagctaaattgcttcataaagatgat
aaaaaagtatcgcctattagagtgggggacttggttagccataagatttttggcacaggg
cgagtgcttgcaatagaagatagcacaaagtgtatgaaagtgaattttggggggcgtatc
caaagggttatgcaaggatttttagaaaaggttagggaagggttttga
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