Helicobacter cetorum MIT 99-5656: HCD_05435
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Entry
HCD_05435 CDS
T02033
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
hcm
Helicobacter cetorum MIT 99-5656
Pathway
hcm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hcm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HCD_05435 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hcm03021
]
HCD_05435 (rho)
03019 Messenger RNA biogenesis [BR:
hcm03019
]
HCD_05435 (rho)
Transcription machinery [BR:
hcm03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
HCD_05435 (rho)
Messenger RNA biogenesis [BR:
hcm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HCD_05435 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
ATPase_2
S1CSD-TOTE-2
AAA_22
Spore_III_AA
AAA_28
AAA
Motif
Other DBs
NCBI-ProteinID:
AFI06089
UniProt:
I0ET20
LinkDB
All DBs
Position
1139075..1140391
Genome browser
AA seq
438 aa
AA seq
DB search
MNENAPTHKGSHKLKTHTPVSGYRIEDLRTYPTEKLLEIANKLKVENPQEFKRQDLMFEI
LKTQVTQGGYILFTGILEIMNDGYGFLRGFDGSFSDGQNDTYVSPSQIRRFALRNGDIVT
GQVRSPKDQEKYYALLKIEAVNYLPLDEIKNRPLFDNLTPLFPDEQIKLEYEPTKVTGRM
LDLFSPVGKGQRALIVAPPRTGKTELMKELAQGITSNHPEVELIILLVDERPEEVTDMQR
SVKGQVFSSTFDLPASNHIRIAELVLERAKRRVEMGKDVVILLDSITRLARAYNAVTPSS
GKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIATALIETGSRMDEVIFEEFKGTGNS
EIVLARNIADRRIYPAFDILKSGTRKDNILLGKERLTKVWVLRNVMQQMDDIEALSFVYS
KMQQTKDNEEFLHLMNEK
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaaaacgcacctacgcataaaggttcgcataaacttaaaacacacacgccagta
agtgggtatcgcattgaagatttacgcacctatcctaccgaaaagcttttagaaattgct
aacaagctcaaagtagaaaacccccaagaatttaaacgccaagacttgatgtttgaaatt
ttaaaaacccaagtaactcagggtggatacattctttttaccggaattttagaaatcatg
aatgatgggtatgggttcttaagaggctttgatggaagtttttcagacggacaaaacgac
acttatgtaagcccttctcaaatcagacgctttgccttgagaaatggcgatattgtaacc
ggtcaagtgcgctccccaaaagaccaggaaaaatactacgctcttttaaaaatagaagcc
gttaattacttgcctttagatgagattaaaaatcgtcctttgtttgacaacctaaccccc
ctatttcctgatgaacaaatcaaattagaatatgagcctactaaagtaaccggtagaatg
ctagatttatttagccctgtgggcaagggtcaaagggctttgattgtcgcaccgcctaga
accggtaaaacagaactcatgaaagaactcgctcaagggattacttctaatcatcctgaa
gtagaacttattatccttttagtagatgaacgccctgaagaagtaactgacatgcaacga
agtgttaaaggtcaagtctttagctccacttttgatttgcccgcaagtaatcacataaga
atcgctgaattagtgttagaaagggctaaaagaagagtggaaatgggtaaagatgtcgtg
attttattagattctattactcgtttagcaagagcctataatgctgtaacgccttcaagt
ggtaaggtcttaagtgggggcgtagatgctaatgccttgcataggcccaaacgctttttt
ggagccgcaagaaatattgaagagggcggaagtttgactatcattgcaaccgcacttatt
gaaacaggctctagaatggacgaagtgatttttgaagaatttaaaggcactggaaatagc
gaaattgtcttagctagaaatattgcagacagacgcatttatccagcctttgatatttta
aaatcaggcacacgaaaagataatatcctacttggtaaagaacgcttgactaaggtttgg
gtattaagaaatgtgatgcaacaaatggacgatatagaagccttaagttttgtatattct
aaaatgcaacagaccaaggacaatgaagaatttttgcatttaatgaatgaaaaataa
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