Helicobacter cetorum MIT 99-5656: HCD_06255
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Entry
HCD_06255 CDS
T02033
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hcm
Helicobacter cetorum MIT 99-5656
Pathway
hcm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hcm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HCD_06255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hcm03019
]
HCD_06255
03009 Ribosome biogenesis [BR:
hcm03009
]
HCD_06255
Enzymes [BR:
hcm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HCD_06255
Messenger RNA biogenesis [BR:
hcm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HCD_06255
Ribosome biogenesis [BR:
hcm03009
]
Prokaryotic type
rRNA helicases
HCD_06255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
Cas3-like_C_2
AAA_22
AAA_30
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
AFI06253
UniProt:
I0ETI4
LinkDB
All DBs
Position
1331864..1333387
Genome browser
AA seq
507 aa
AA seq
DB search
MRFMHNNQHQQNIEEDFDRLLDELPTEIDDDTYHKPSFNDLGLKPQVLKSVYEAGFNSPS
PIQEKAIPAVLEGRDVVAQAQTGTGKTAAFALPIINNLKNNHTIEALIITPTRELAMQIS
DEIFKLGKHTKTRTVCVYGGQSIKRQCEFIEKNPQVMIATPGRLLDHLKNERIHRFVPKV
VVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEPIKKLADKILENPIKIHIAP
SNITNTDITQRFYVINEHERAEAIMRLLDTQSPKKSIVFTRTKKEANELHKILVSKNYKS
TALHGDMEQRERRTSIMAFKKNAADVLVATDVASRGLDISDVSHVFNYHLPLNTESYIHR
IGRTGRAGKKGMAITLVTPLEYKELLRMQKEIGSKIELFEIPTIGENQIIKTLQNAKVSE
KVVSLYEQLTETFEPSQLILKLLSLQFETSKIGLNQEEIHAILHPNKEKVQKRPSRANSK
THHKHERTHSFKKHHKSNHHSKNHKRY
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atgagatttatgcataacaaccagcaccaacagaatattgaagaagattttgatagatta
ttagacgaactccccacagaaattgatgatgacacttaccataaaccaagttttaatgat
ttaggtttaaaaccgcaagtcttaaaatccgtttatgaagccggttttaattccccaagc
cccattcaagaaaaggccattccagccgttttagaaggcagagatgtagttgcacaagca
caaactggcacaggcaaaaccgccgcttttgctctccctatcatcaataaccttaaaaac
aaccacaccatagaagccttaatcatcacgcccaccagagaattagccatgcaaattagt
gatgagatttttaaactaggtaagcacactaaaacccgtacggtgtgcgtctatggcggt
cagagtatcaaaagacaatgcgagttcattgagaaaaatccccaagtaatgatagccacg
ccaggaagactactagaccatttaaaaaacgaacgcattcatagatttgtgcctaaagta
gtcgtgttagatgaaagcgatgaaatgctagatatgggctttttagatgatattgaagag
atttttgattaccttcctagcgaagctcaaatcttactcttttcagccaccatgccagag
ccgattaaaaaactagcggataagattttagaaaatcctatcaaaatccatattgcccca
tcaaatattactaataccgacatcacccaacgcttttatgtgattaatgagcatgagaga
gcagaagctattatgcgccttttagacacacaatctcccaaaaaaagcattgtattcacc
cgcaccaagaaggaagccaatgaattgcacaagattcttgtttctaaaaattataaaagc
accgccttgcatggagatatggagcaaagagaacgccgcacttccattatggcattcaaa
aagaatgccgctgatgtgttagtggctactgatgtagccagccgtgggctagatattagc
gatgtaagccatgtgtttaactaccacctacccctaaatactgagagttatatccatcgt
atcggaagaaccggacgagcgggtaaaaaaggcatggctatcactctagtaaccccccta
gaatacaaagagcttttacgcatgcaaaaagaaatcggctcaaaaattgagctttttgaa
atccctaccatcggtgaaaatcaaatcattaagaccttacaaaacgccaaggtgtctgaa
aaagttgtaagtctctatgagcaattaacagagacttttgagccgtctcaattgattcta
aagcttttaagcttgcaatttgagaccagcaaaataggcttaaaccaagaagaaatccat
gcgattttacaccccaataaagagaaggtgcaaaaacgccctagtagagccaattctaaa
acacaccataagcatgagcggacacactctttcaaaaaacaccacaaatcaaaccaccat
tctaaaaatcataaacgctattaa
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