Helicobacter cetorum MIT 99-5656: HCD_07620
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Entry
HCD_07620 CDS
T02033
Name
(GenBank) topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
hcm
Helicobacter cetorum MIT 99-5656
Brite
KEGG Orthology (KO) [BR:
hcm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hcm03032
]
HCD_07620
03400 DNA repair and recombination proteins [BR:
hcm03400
]
HCD_07620
Enzymes [BR:
hcm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HCD_07620
DNA replication proteins [BR:
hcm03032
]
Prokaryotic type
DNA Topoisomerases
HCD_07620
DNA repair and recombination proteins [BR:
hcm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HCD_07620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
Toprim_4
F-93_WHD
Motif
Other DBs
NCBI-ProteinID:
AFI06511
UniProt:
I0EU92
LinkDB
All DBs
Position
complement(1617347..1619269)
Genome browser
AA seq
640 aa
AA seq
DB search
MNNSVIIIESPNKVAKIKEITGAKVFATCGHFMDLKHIEVEKNFSPMFDYKSTDKKQSIN
RIINECKNKVVYIATDPDREGYAIGYMFYQLIKNLAKEIYRAEFHEITESGINKGLKSAL
LFSQSNMKFYESFLARRVADMYMGYTLSPYLAKGLNQYPQSAGRVKTPALYLIVKRALEI
ESFEKLDIKDKMSYQIQAKVLLNNNEVILKHVKDNKEFKFDNKEQAQSFLDDLKQGLGDK
VLLNNIETKDTESSPPKPFTTSKLLKSASKSLKLDTKTIQNLAQNLFEAGLITYIRTDSE
ALSKEYLQEHKEFFESVYPSIYEYREYKAGKNSQAEAHEAVRITHPHAFENIHQVCNEHN
ITDSKAIGLYQLIFVNTLASQSKNALYESVSMHFKIKMHDFKCSFKNLKFKGFLEILELN
KNKQEEQDEKEKELSLNIKDFSPNTLHPLKELFIKDILKTSPKPYLESDFIEVMEKNGIG
RPSTYASYLPELISKGHIQINGNKRVIEPTALGKSIVEFFNKDAKSMFILNVDFTKQNEE
VLDKIAMGEVGYVEFMELIKEKLGDEISSLYKGIKRENTPENTAKTYQSYPPNEKQLQYA
KDIANLLNLKLPKDLERNYKICSEFIDKHKQQAYKARFKK
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atgaataatagtgtcattattattgaaagccctaataaagtggctaagattaaagaaatc
acaggagcaaaggtctttgctacttgcggacattttatggatttaaaacatattgaagta
gaaaaaaattttagtcctatgtttgattataaaagcacagataaaaaacaatctatcaat
aggattatcaatgaatgcaaaaataaggtagtctatatagctactgaccctgatagagag
ggttatgctataggctatatgttttaccaactcatcaaaaacttagccaaagagatttat
agagcagagtttcatgaaattacagaaagtgggattaacaagggcttaaaatccgccttg
cttttctctcaatctaacatgaaattttatgaaagctttttagctagaagagtggcagac
atgtatatgggctatacactttccccttacttagccaaaggcttaaatcaatacccacaa
agtgcagggcgagtcaaaaccccagctttgtatttgattgttaaaagagctttagaaata
gaaagttttgaaaaactagacattaaagacaagatgagctatcaaatccaagctaaagtc
ttacttaataataatgaggtcattttaaagcatgttaaagacaataaggaatttaaattt
gacaataaagagcaagcccaaagttttttagatgatttaaagcaaggcttaggggataaa
gtgctacttaataacattgaaaccaaagatacagaaagttcgcctcccaaacctttcact
acttcaaagctactcaaaagcgcctctaaaagcttaaaactagacaccaaaaccatacaa
aacttagctcaaaatctttttgaggctggactaatcacttatattagaacagatagtgaa
gccttaagcaaagagtatttacaagaacataaagagttttttgagagcgtttatcctagc
atatatgaatatagggagtataaggctggaaaaaattcacaagcggaagcccacgaagct
gtccgtatcacacacccccatgcttttgagaatattcatcaagtatgcaacgagcataat
attactgatagtaaagccatagggctataccaacttatttttgttaacacccttgcctct
caaagtaaaaatgctctttatgaaagcgtgagcatgcattttaaaattaaaatgcatgat
tttaaatgcagttttaaaaatctaaaattcaagggttttttagagattttagaactcaat
aagaacaaacaggaagaacaagatgaaaaagaaaaagaattaagtttaaacattaaagat
tttagtcctaacactctacaccctttaaaagaactctttattaaagacattcttaaaact
agccctaagccctatttagagagcgattttattgaggttatggaaaaaaatggcataggt
cgccctagcacttatgcgagttacttgcctgaactcatttcaaaaggacacattcaaatt
aatggcaataaaagagtgatagaacccactgcattaggtaaaagtattgtagagtttttc
aataaagatgctaagagcatgtttattttaaatgttgatttcaccaagcaaaacgaagaa
gtgctagataagattgcaatgggggaagtgggctatgtagagtttatggagcttattaaa
gaaaaactaggcgatgaaatcagctctttatataaggggataaaaagagaaaatacccct
gaaaacacagccaaaacttatcaatcttatccacctaatgaaaaacaactgcaatatgct
aaagacattgcaaacttgttgaatttgaaactacccaaagatttagaaagaaattacaag
atttgctcagagtttattgacaaacacaagcaacaagcttataaggctagatttaaaaag
tag
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