Helicobacter cetorum MIT 99-5656: HCD_07935
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Entry
HCD_07935 CDS
T02033
Name
(GenBank) topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
hcm
Helicobacter cetorum MIT 99-5656
Brite
KEGG Orthology (KO) [BR:
hcm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hcm03032
]
HCD_07935
03400 DNA repair and recombination proteins [BR:
hcm03400
]
HCD_07935
Enzymes [BR:
hcm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HCD_07935
DNA replication proteins [BR:
hcm03032
]
Prokaryotic type
DNA Topoisomerases
HCD_07935
DNA repair and recombination proteins [BR:
hcm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HCD_07935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
DUF7750
SpecificRecomb
Motif
Other DBs
NCBI-ProteinID:
AFI06571
UniProt:
I0EUF2
LinkDB
All DBs
Position
complement(1681838..1683514)
Genome browser
AA seq
558 aa
AA seq
DB search
MYSNCVFIIESPNKIYKLKELIGSSFVFATGGHFVELVNIEVNKGFNPVFEIKKSPDKKK
DKSVHINHMINQCKERIVYIATDPDREGYGIGYKFYEKIKNLAKTIYRVEFFEITKSGVE
KGLNNAVLFSQSNLNLYYSWLGRIVNDQFIGFTLTPYLRKGIKNFEVSAGRVQTPALSIL
VELDRKIKAFEQKSVDEKLSYSIEAIVDLLGSQIPIALIEENKKKVFDTKEQAQNFLNDL
KDNLNPLAFLDTMEQIDKEKAPPKPFTTSKLLKDGARVLGMGVKQIQDYAQKLFEAGLIT
YIRTDSEALSKEYLQEHKEFFESVYPSVYEYREYKAGKNSQAEAHEAIRITHPHRYEDLK
QVCLEHQITDIDALKVYTLIFFNTICSQSKNAIYENTTLNLKIKTHNFKGSFSKLKFKGF
KEIKDLEEEKNDEEEIQSGIDFSSLQLKTQMPIVNFCIKEIKAKAPSPYTESTFITMMET
YGIGRPSTYASIFETLTSKGYIALEGKNRKITPTALGKSIISFFENDIQTRWVTISKVDD
SFTKELEESLDYIVKDGA
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgtatagcaactgcgtatttatcatagaaagccctaataaaatctacaaactcaaagaa
ttaataggaagttcatttgtttttgcgacaggggggcattttgtagagttggttaatatt
gaagtgaataaagggtttaacccagtttttgaaatcaaaaaaagccctgataagaaaaag
gataaatccgttcatattaaccatatgataaatcaatgtaaggaaagaatagtctatatc
gccacagaccctgatagagaagggtatggcataggctataagttttatgaaaaaattaaa
aatctagctaaaacaatctatcgtgtggagttttttgagattacaaaaagcggtgtagaa
aaaggcttgaataacgctgtgttattctctcaaagcaatctcaatctttattatagttgg
ttgggtaggattgtaaacgaccaattcataggttttactttaacgccttatttacgcaaa
ggtattaaaaattttgaagtaagtgctggtagagtgcaaacccctgctctttctattcta
gtagagctagacagaaaaataaaagcttttgagcaaaaaagcgttgatgaaaaattaagt
tatagcatagaagctattgttgatttattaggctctcaaatccctattgctctaatagaa
gaaaataaaaagaaagtgtttgacaccaaagaacaagctcaaaactttttaaatgattta
aaagacaatctcaatcccttagcttttttagacacaatggaacaaattgacaaagaaaaa
gctccgcccaaacctttcactacttctaagcttttaaaagatggggctagagttttagga
atgggagtaaaacaaatccaagattacgctcaaaaactctttgaagctgggttaatcact
tatattcgcactgatagtgaagccttaagcaaagaatatttacaggagcataaagagttt
tttgagagcgtttatcctagtgtgtatgaatacagagaatacaaggctggtaaaaactca
caagcggaagcccacgaagctatccgcattacacacccccatagatatgaagacctaaag
caagtctgcttagaacatcaaatcacagatattgatgccttaaaagtttatacgcttatc
ttttttaatacgatttgctcgcaaagtaaaaacgctatctatgagaacacgactttaaac
cttaagataaaaacgcataactttaaaggtagttttagcaaactcaaatttaaaggcttt
aaagaaattaaagacttagaagaagaaaaaaacgatgaagaagaaatacaaagcggtatt
gatttttcaagcctacaattaaaaacccaaatgcctattgtgaatttttgtatcaaagag
attaaagccaaagccccaagcccttatacagaaagcacctttattaccatgatggaaacc
tatggcatagggagacctagcacttatgctagtatttttgagaccctaacaagtaaaggc
tacattgccctagaaggcaagaacagaaaaatcacgcccacagctcttggtaaaagtatc
ataagtttttttgaaaatgatattcaaacacgatgggtaactatttcaaaagtagatgat
agcttcaccaaagaactagaagaaagcttagactatatcgttaaagatggagcttaa
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